Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme1487g00001 ATGATAGTAGACTTATCATTACAACAAGGTATAGACAATTGCTTATTGGAAGAGTTGATTGGATATACAAGGTCAAGAAGTGGANGGTATAGACAATTGCTTATTGGAAGAGTTGATTGGATATACAAGGTCAAGAAATGGAAAACACCAGAATCTCTAAAGCTTTTTAGCTTAGAAGCCTTCAAGCAAAGCTATCCTCAAAAGGGTTATGAAGATCTCTCACAAAAGGCTGTTGATTATGCAGGTGGTGTTCCGTTAGCCCTTAAAGTTTTAGGCTCGTATCTTCGTTTGAAAGACACGGGGTTTTGGGAAAGTACTTTTAGAAAACTCAACATGTATCCTAATGAGACAATTCAAAAATTGTTACAAGTTAGTTATGATGGTTTGGATCATCTAGAGCAGAAGATATTTCTAGATATTGCAGTATTTTTCAAAGGAAAAAAGAAAGATCATGTCATAACAATATTGGATGCTTGTGGTTTTGAAGCAAGTAGTGGAATTGAAGTACTTGAAGACAAAGCCTTGATAACTATCTCAAATAGTGGTAGAATACAAATGCATGACTTGCTTCAAAAAATGGGTTTGGAAATAGTACGTAGAGAATGTAGCAGAAATCCTGGAAGACGTACTCGATTGAGGGATAGCGAAGCTCGTGAAGTAGTTGAAGAAAACAAGGGGACCGAATTAATCGAAGGCATAATGTTGAATTTGTCTCAAATTAAATATTTAACTCTGCATGCTGACACATTCACAAAGATGAAAACCTTAAGATTTGTTAGATTCTATACCCCTTTGGGAAAGAGCTCTAGTACTACATACCTTGACCTTCCTACAGTTCTTGAGCCATTTTCTGACAAACTGAGGTACTTTGAGTGGATTGGATACCCTTTTGAGTCTCTTCCACAAACTTTTTGTGCTAAGTGGCTTGTTGAAATTCGCATGCCACACAGCAATGTTGATCAACTATGGCAGGGGATACAGGAACTTGATAAATTAGAGGGAATTGATCTTAGTGAAAGCAAGAAATTTGCATGGCTTCCGGATCTGTCTAAGGCATCAAGAATTAAATGGGTGAACCTTTCTGGTTGTGAAAGTATACGGTATCTTCATACATCTGTTTTATCCTCAGACACGCTTATTACTTTGATACTGGATAGGTGTATAAATCTTAGGAGTGTTAAAGGTCAGAAGCATTTAAAGTCTTTGAAAAAGATCAGTGTCAATGGTTGCTTAAGTCTCGAGGAATTTGCGGTATCCTCAGATTTGATTGAAAACTTGGATTTAACCAACACAGGAATTTGCGGTATCCTTAAGTGGCTTAATCTAGAGGGTTTAAGACTAAGGAATCTTCTAAAGGAGTTATCTTGCCTGACATCTCTTAAGGAACTGAAGCTTTCTGATAGTGGACTTGCAATTGACAAACAACAGCTACATGTCCTATTTCATGGCTTACAATCGCTACAAATACTACATTTGAAGGATTGTAGTAACTTGTTTGAACTCCCAGACAACACTAATGTCTTATCACAATTAAGGGAATTAAGGCTAGATGGAAGTAATGTGAATAAATTACCTGAAAGTATCAAGCAACTAGAAGAGTTGGAAATTCTCTCCTTGGAGAATTGCATACAGCTTCAGTTCTTACCAGAGCTTCCACCCTTTATCAAACTATTACGTGCAGTTAACTGTACGTCATTGGTGTCGGTGTCGAATTTAAAGACATTGGCAACAGAGATGATGGGAAAGGGCAAAAACATTTCATTCAAGAATAGCTTGAACTTGGATGGACATTCACACTATAGTATTATGGAAAGTCTTCATCTAACAATGGCGAGTGCTGCATTTCACAATGTGTTGGTAAGAAGATTCCGTCTGGCTGTGCACAGCTACAATTACACCAGTGTTGAGATTTGTGTACCAGGAAGAAGGGTCCCAAGACAGGTTAAATATCGAACAACCAAGTCCTCCATTACCATTAAACTCCCTAACCGTTCGAACTTGTTGGGATTCATTTACTCGGTGGTTCTTTCTCCAGTACGTGGAATGAAGAAGCATGGTAGTCAAATAAAATGTCAATGCCAGTTAGCAGAAAACACAAAGGTTACATGGTTATATACAGATATCACAGAACTGAGTTCTGATCATGTTTGTGTATGGGGGAAGTTGACGGTTCAATCTGCATTAAAGAGTGTGGGGTACAACTCATCAGTAATTCAGAATTACATAGTGTTTTACCTGAACTGGACTTGGATTCAGATAAGAAAAAGGACTTGGAGAGGGGAGTGGAGCTTGAATCAAGACGAGCCATAA 2310 0.3792 MIVDLSLQQGIDNCLLEELIGYTRSRSGXYRQLLIGRVDWIYKVKKWKTPESLKLFSLEAFKQSYPQKGYEDLSQKAVDYAGGVPLALKVLGSYLRLKDTGFWESTFRKLNMYPNETIQKLLQVSYDGLDHLEQKIFLDIAVFFKGKKKDHVITILDACGFEASSGIEVLEDKALITISNSGRIQMHDLLQKMGLEIVRRECSRNPGRRTRLRDSEAREVVEENKGTELIEGIMLNLSQIKYLTLHADTFTKMKTLRFVRFYTPLGKSSSTTYLDLPTVLEPFSDKLRYFEWIGYPFESLPQTFCAKWLVEIRMPHSNVDQLWQGIQELDKLEGIDLSESKKFAWLPDLSKASRIKWVNLSGCESIRYLHTSVLSSDTLITLILDRCINLRSVKGQKHLKSLKKISVNGCLSLEEFAVSSDLIENLDLTNTGICGILKWLNLEGLRLRNLLKELSCLTSLKELKLSDSGLAIDKQQLHVLFHGLQSLQILHLKDCSNLFELPDNTNVLSQLRELRLDGSNVNKLPESIKQLEELEILSLENCIQLQFLPELPPFIKLLRAVNCTSLVSVSNLKTLATEMMGKGKNISFKNSLNLDGHSHYSIMESLHLTMASAAFHNVLVRRFRLAVHSYNYTSVEICVPGRRVPRQVKYRTTKSSITIKLPNRSNLLGFIYSVVLSPVRGMKKHGSQIKCQCQLAENTKVTWLYTDITELSSDHVCVWGKLTVQSALKSVGYNSSVIQNYIVFYLNWTWIQIRKRTWRGEWSLNQDEP 769
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme1487g00001 769 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 34 417 IPR044974 GO:0006952
Trme1487g00001 769 Pfam NB-ARC domain 44 127 IPR002182 GO:0043531
Trme1487g00001 769 Pfam Leucine Rich Repeat 309 327 IPR011713 -
Trme1487g00001 769 Gene3D - 48 130 IPR042197 -
Trme1487g00001 769 PRINTS Disease resistance protein signature 482 498 - -
Trme1487g00001 769 PRINTS Disease resistance protein signature 81 95 - -
Trme1487g00001 769 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 33 140 IPR027417 -
Trme1487g00001 769 Gene3D Ribonuclease Inhibitor 215 603 IPR032675 -
Trme1487g00001 769 SUPERFAMILY L domain-like 186 550 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme1487g00001 Trme-Chr1487 447 3063 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme1487g00001 37 569 WRKY Transcription Factor Family AT5G45050 30.978 3.84e-61 222
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme1487g00001 - - cam:101515491 937.176