Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme1486g00001 TATTGGCTGTATAATCTTAGAGATGCTATCTTTGAAATTGATAATTTGTTTGACGAAGCATTGCAAAGCGAATTGGAAGTTGATGAGTATCAAACTCTAACTCCTACTTCTCCTTTAATTGCAAAATTGCAAAATTTAATTGAAAGATTAGAATGCTTGAGTTCACGAGCACATGGTAGATTTGGTGTTTCCGATTCCAGCGGTGTTTCCAATTCCAGCCGTGTTTGGCATGAAACTGCTACAAGTTCCGTTTTGGATGATGATGAATCTTCTATTTATGGAAGAGACTGTGATAAAAACAAACTTAAACATCTTTTGTTGTCTACTGATTGTGATAATAGTAAAAAAAGAATTATTTCAATTGCGGGTATGGGAGGGGTTGGTAAAACAACCCTTGCTAAACTCCTTTACAATGATCCTGAAGTAGATGACAAATTTGAGTTAAAATTGTGGGTGTATATCTCAATAGATTTTGATATTTCGAGGGTTTTGGAAACAATTCTTGAATCTATTCCTTCACAAAAAAACAGTAGTGATGAATCTTTCAATGCAAAAAGAAATGACACTAGTGATGTGGATACCATTTACCAGAAACTTCTATTAGCGACATTGCTACAAGTTTTGAGCACTGCAAAGTTTTTGCTAGTACTGGATGATGTGTGGGATACAAAATCTTTCAATTGGATAAATCTGACGGAAATCTTCAATGCTGGGAAAACGGGAAGTAGGATCATCATCACAACACGGGATGAAAGAGTTGCAAGATCCTTGCAAATCTTTCATTCTGTCTACTATTTGAGACCTCTAGAAAGCGAAGATTGCTGGTCTTTAGTTGCCAGACATGCATTTGGAGAATGTAACGACCAACAACAATCCAATTTAGAAGAAATTGGCAGAAAAATTGCAAAAACATGTCATGGGTTACCATTAGCTGCAATAACAGTTGCAGCTTTTATTCGCTTCAAATTATCCACANNNNNNNNNNANNNNNNNNNNANNNNNNNNNNATGGGAATTGATTGATTATAAGGTTCAACCTGTCCTAAAATTGAGCTACCATTATCTTTCGGCTCCTTTAAAACAATGCTTTGCGTATTGCTCAATTTTTCCGAAGAAGTCCATCTTAGAAAAAAATGTGGTAGTTCAGTTGTGGATAGCAGAAGGCTTAGTAGAATCGTTCACAAATCAGGAAAATATCGGTGATGAATACTTTGATGAACTAGTGTCAAAGTCTTTGATACATCGACGATATATTGGTGGTGAGGAAGCAAACTTTGAAATGCACAGCCTCATCCATGATATAGCTACAATGGTTTCATCTTCATACTGTAAAAGGTTGGACGAACATAACCTACATGAAAGGATACATAATTTATCATACAATAGAGGGCTATACGACTCATTTCATAAATTTGATAAATTATATGGCGTAAAAGATCTGCGTACCTTTCTAGCATTACCATTACAAGAACAATTGCCTCTTTGTTTGTTATCGAACAAGGTAGTACACAACTTGCTGCCAACAATGAAACAATTGGGCGTGCTATCTTTGTCAAACTACAAGAGTATCACTGAGGTTCCCAACTCTATTGGAGATTTGTTATACCTGCGGTACTTAAATCTTTCTCACAMTAAGATTGAAAGGTTGCCTTCTGAAACATGCAAGCTGTACAATCTGCAGTTCTTGTTGTTGTCAGGCTGTAAAAGGCTCACTGAATTGCCCGAGGACATGGGAAATTTGGTTAATTTGCGCCACCTTGACGTTAGCCACACTGCATTGAGGGAGATGCCCGTACAAATAGCCAAACTGGAAAATCTTCACACACTGTCTGATTTTGTTGTCAGCAAGCATAATGGTGGGTTGAAGATTGCAGAGCTAGGAAAATTTCCCCACCTACATGGAAAAYTTTCCATTKCACAACTAAATAATGTCAATGACCCCTTTGAAGCAGTTCATGCCAATATGGAGATGAAAGAACGAATAGACGAGTTAGCTTTAGAATGGGATTGTGGTAGTACTTTTTCAGATTCACAAGTTCAAAGTGTTCTACTTGTACTTGAACATTTGCGACCCTCAACAAATTTGAAACGTCTTACCATCAAAGGCTATGGTGGAATCTGCTTTCCGAATTGGTTGGGTGATTCTTTATTTAGAAACATGGTGTATTTAAGGATCTCGGATTGTGATAATTGTGAATGGCTTCCACCTCTTGGACGATTGGGTAATCTGAAAGAACTCATTGTTGATGGGTTGCAATCGGTACAAACAATTGGTGCTGAGTTCTATGGAAGTGATAGTTGTTCATTTCAACCATTTCCCTTCTTGGTGACTCTACGCTTTGAGAATATGAAAAATTGGGAGGAATGGAACTTTATTGGAGGTATGACTACAATGTTTCCTTGTCTAAAAACTTTGTCACTAAGCAAGTGCGCGAAACTGAGAGTAGGAAACATGCCTGACATATTTTCTTCTTTAACTGAACTTGAGTTAAGAGAATGTCCTCTATTGGTGGAATCAACGCCCATGATTGGAGGTACGGCTACAAAGTTTTCTTCCTTGAGTGAACTTGAGTTTAGAGAATGTCCTCTACTGGTGCAATTGCCGTCATCATCAGATCATGTCTTCAACCAACCGATGTTCCCATTGAATTCTCTTCAAAAGTTGACCGTAGACGGCTTTCCATCTCTGTTGTCTTTCCCAACAAACGATCTACCAAAAACCTTGAAATTTCTCATAATCAGCAATTGTGAGAATCTAGAGTTCTTTCCTCATGAATACCTGCACAATTTCACATCGCTTGAGGAATTGAAAATATCTTATAGCTATGATGCATCGAAAAAGAGTCTCTCATTTCTTAGAAGCATCAAACTATGGGATTGTAATGAACTGGAGTCATT 2897 0.3711 YWLYNLRDAIFEIDNLFDEALQSELEVDEYQTLTPTSPLIAKLQNLIERLECLSSRAHGRFGVSDSSGVSNSSRVWHETATSSVLDDDESSIYGRDCDKNKLKHLLLSTDCDNSKKRIISIAGMGGVGKTTLAKLLYNDPEVDDKFELKLWVYISIDFDISRVLETILESIPSQKNSSDESFNAKRNDTSDVDTIYQKLLLATLLQVLSTAKFLLVLDDVWDTKSFNWINLTEIFNAGKTGSRIIITTRDERVARSLQIFHSVYYLRPLESEDCWSLVARHAFGECNDQQQSNLEEIGRKIAKTCHGLPLAAITVAAFIRFKLSTXXXXXXXXXXXWELIDYKVQPVLKLSYHYLSAPLKQCFAYCSIFPKKSILEKNVVVQLWIAEGLVESFTNQENIGDEYFDELVSKSLIHRRYIGGEEANFEMHSLIHDIATMVSSSYCKRLDEHNLHERIHNLSYNRGLYDSFHKFDKLYGVKDLRTFLALPLQEQLPLCLLSNKVVHNLLPTMKQLGVLSLSNYKSITEVPNSIGDLLYLRYLNLSHXKIERLPSETCKLYNLQFLLLSGCKRLTELPEDMGNLVNLRHLDVSHTALREMPVQIAKLENLHTLSDFVVSKHNGGLKIAELGKFPHLHGKXSIXQLNNVNDPFEAVHANMEMKERIDELALEWDCGSTFSDSQVQSVLLVLEHLRPSTNLKRLTIKGYGGICFPNWLGDSLFRNMVYLRISDCDNCEWLPPLGRLGNLKELIVDGLQSVQTIGAEFYGSDSCSFQPFPFLVTLRFENMKNWEEWNFIGGMTTMFPCLKTLSLSKCAKLRVGNMPDIFSSLTELELRECPLLVESTPMIGGTATKFSSLSELEFRECPLLVQLPSSSDHVFNQPMFPLNSLQKLTVDGFPSLLSFPTNDLPKTLKFLIISNCENLEFFPHEYLHNFTSLEELKISYSYDASKKSLSFLRSIKLWDCNELES 965
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme1486g00001 965 Gene3D - 269 351 IPR042197 -
Trme1486g00001 965 FunFam Probable disease resistance protein At1g63360 352 437 - -
Trme1486g00001 965 PRINTS Disease resistance protein signature 118 133 - -
Trme1486g00001 965 PRINTS Disease resistance protein signature 797 813 - -
Trme1486g00001 965 PRINTS Disease resistance protein signature 207 221 - -
Trme1486g00001 965 PRINTS Disease resistance protein signature 305 319 - -
Trme1486g00001 965 Pfam NB-ARC domain 99 325 IPR002182 GO:0043531
Trme1486g00001 965 SUPERFAMILY L domain-like 452 868 - -
Trme1486g00001 965 FunFam Probable disease resistance protein At1g61300 76 260 - -
Trme1486g00001 965 Gene3D - 75 261 IPR027417 -
Trme1486g00001 965 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 84 366 IPR027417 -
Trme1486g00001 965 Gene3D - 352 437 IPR036388 -
Trme1486g00001 965 SUPERFAMILY L domain-like 823 960 - -
Trme1486g00001 965 Gene3D Ribonuclease Inhibitor 660 825 IPR032675 -
Trme1486g00001 965 Gene3D Ribonuclease Inhibitor 879 965 IPR032675 -
Trme1486g00001 965 Gene3D Ribonuclease Inhibitor 490 644 IPR032675 -
Trme1486g00001 965 PANTHER DISEASE RESISTANCE PROTEIN RP 32 869 IPR044974 GO:0006952
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme1486g00001 Trme-Chr1486 72 3064 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme1486g00001 523 618 WRKY Transcription Factor Family AT4G12020 38.144 2.85e-08 56.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme1486g00001 - - tpra:123913254 1179.47