Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme148645g00001 ATGACAGGTACTAGGACAGGTGGAAGAACAACTTTAGATTGGAACACGCGAGTAAAAATCACTCTCGGGATTGCCCGAGGAATTGCTCATTTACATTCAGTTGGTGGTCCAAAATTCGTACATGGAAATGTGAAATCCTCTAATGTCCTCCTAAACCAAGATAACGATGGCTGCATTTCCGATTTTGGCCTGACTCCGCTCATGAACGTGCCGGCAACTCCTTCTAGAGCTGCAGGCTACCGTGCTCCCGAGGTAATTGAAACTCGGAAGCACACTCATAAATCAGATGTATACAGTTTTGGCGTCCTCCTTTTGGAAATGCTTACAGGTAAAGCGCCGCAACAGTCTCCCGTACGCGATGACATGGTTGATCTCCCTAGATGGGTTCAGTCCGTTGTTCGGGAGGAGTGGACCGCTGAGGTTTTCGATGTGGAGCTAATGAGGTACCAAAATATTGAAGAAGAAATGGTGCAAATGTTGCAAATTGGCATGGCTTGTGTCGCAAAGGTTCCGGATATGAGGCCTAACATGGAG 534 0.4719 MTGTRTGGRTTLDWNTRVKITLGIARGIAHLHSVGGPKFVHGNVKSSNVLLNQDNDGCISDFGLTPLMNVPATPSRAAGYRAPEVIETRKHTHKSDVYSFGVLLLEMLTGKAPQQSPVRDDMVDLPRWVQSVVREEWTAEVFDVELMRYQNIEEEMVQMLQIGMACVAKVPDMRPNME 178
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme148645g00001 178 ProSiteProfiles Protein kinase domain profile. 1 178 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme148645g00001 178 PANTHER OS05G0588300 PROTEIN 9 178 - -
Trme148645g00001 178 FunFam protein STRUBBELIG-RECEPTOR FAMILY 8 2 178 - -
Trme148645g00001 178 Gene3D Transferase(Phosphotransferase) domain 1 4 178 - -
Trme148645g00001 178 Pfam Protein kinase domain 15 177 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme148645g00001 178 SUPERFAMILY Protein kinase-like (PK-like) 9 178 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme148645g00001 Trme-Chr148645 16 549 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme148645g00001 1 178 Receptor kinase-like Gene Family AT5G58300 76.404 6.34e-101 302
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Trme148645g00001 Pkinase 2.2e-23 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme148645g00001 - - lja:Lj0g3v0236019.1 338.961