Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme14850g00001 ATGCATGCTGATGTGGAGACCGATGAAGTGTATGCGCAGATGACCTTGCAACCTCTGAATGCTCAAGAGCAAAAAGAGGCTTACCTTCCAGCAGAGTTGGGCACTCCGAGTAAACAGCCAACAAACTACTTCTGCAAGACTTTGACTGCTAGTGACACAAGCACTCATGGGGGATTCTCTGTGCCTCGCCGCGCAGCTGAGAAAGTGTTTCCTCCATTGGACTTCTCTCAACAGCCTCCTGCTCAAGAGTTAATAGCAAGGGATTTGCATGGGAACGAATGGAAATTCAGACATATCTTCCGAGGTCAACCTAAAAGGCATCTACTTACAACTGGGTGGAGTGTTTTTGTGAGTGCTAAAAGACTTGTTGCTGGTGATTCTGTGCTGTTTATCTGGCAAGTGATTTTGTTGTCAAAGAACGACAAGAACCAATTGCTTCTTGGCATCCGCCGTGCTAGTCGACCACAAACTGTGATGCCTTCATCGGTGTTGTCAAGTGATAGTATGCACTTGGGACTTCTTGCTGCAGCAGCTCATGCGGCTCAAACCAATAGTCGTTTCACTATTTTCTATAACCCACGTGCTTGCCCATCAGAATTTGTCATACCCTTAGCGAAGTATGTTAAAGCTGTGTATCATACTCGAGTTTCAGTTGGTATGCGTTTCAGGATGCTTTTTGAAACAGAAGAGTCTAGTGTGCGACG 704 0.4602 MHADVETDEVYAQMTLQPLNAQEQKEAYLPAELGTPSKQPTNYFCKTLTASDTSTHGGFSVPRRAAEKVFPPLDFSQQPPAQELIARDLHGNEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVLFIWQVILLSKNDKNQLLLGIRRASRPQTVMPSSVLSSDSMHLGLLAAAAHAAQTNSRFTIFYNPRACPSEFVIPLAKYVKAVYHTRVSVGMRFRMLFETEESSVRR 235
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme14850g00001 235 Gene3D - 42 152 IPR015300 -
Trme14850g00001 235 Pfam Auxin response factor 177 235 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Trme14850g00001 235 Pfam B3 DNA binding domain 44 152 IPR003340 GO:0003677
Trme14850g00001 235 SMART B3_2 44 153 IPR003340 GO:0003677
Trme14850g00001 235 ProSiteProfiles B3 DNA-binding domain profile. 44 153 IPR003340 GO:0003677
Trme14850g00001 235 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 1 235 IPR044835 GO:0003677|GO:0006355|GO:0009725
Trme14850g00001 235 SUPERFAMILY DNA-binding pseudobarrel domain 29 180 IPR015300 -
Trme14850g00001 235 CDD B3_DNA 43 132 IPR003340 GO:0003677
Trme14850g00001 235 FunFam Auxin response factor 42 153 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme14850g00001 Trme-Chr14850 18 1450 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme14850g00001 1 235 B3 DNA Binding Superfamily AT1G30330 92.766 2.55e-149 437
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Trme14850g00001 B3 4.6e-22 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme14850g00001 - - gmx:100798719 433.721