Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme1484g00001 ATGAATCCTCCTAACCTAGCTTGCTGCCCTACCTGCAATGTTCACTTGAACTCCTTAACCACTCCACTAGAGCATATGTGCCCTAAATGCATTATTGGTGCTGCAAAGTTTGCAAGAAACATAGCATTACAATACGAAGATCTGATGCAGCAAAACCGCAAGTTGATGGCAAAAAACCAATCTTTGGTGGCCGAATATTTGATGGTTTCTGCATCTTCTTCATCACAAATCCAAAAAGAGAACGATCCTCGCTACAAGACAATTTTGTGCACAAACTGGGAGAAAAATACACGCTKCCGATATCGAAACAAATGCTTATACGCCCATGGCATCGGTGAGCTAAAGGATAAGGAAATGTGCATACTGTTTGAAGACACTAGAAACTGCCCAAGAGGGACGACATGTCCTTTTCGTCACTAG 420 0.4238 MNPPNLACCPTCNVHLNSLTTPLEHMCPKCIIGAAKFARNIALQYEDLMQQNRKLMAKNQSLVAEYLMVSASSSSQIQKENDPRYKTILCTNWEKNTRXRYRNKCLYAHGIGELKDKEMCILFEDTRNCPRGTTCPFRH 139
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme1484g00001 139 ProSiteProfiles Zinc finger C3H1-type profile. 84 112 IPR000571 GO:0046872
Trme1484g00001 139 Coils Coil 38 65 - -
Trme1484g00001 139 ProSiteProfiles Zinc finger C3H1-type profile. 114 139 IPR000571 GO:0046872
Trme1484g00001 139 PANTHER CCCH ZINC FINGER/TIS11-RELATED 71 139 IPR045877 GO:0003729
Trme1484g00001 139 SUPERFAMILY CCCH zinc finger 83 115 IPR036855 GO:0046872
Trme1484g00001 139 Gene3D - 77 117 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme1484g00001 86 139 C3H Transcription Factor Family AT1G68200 37.097 3.63e-06 43.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Trme1484g00001 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme1484g00001 K15308 K18753 cpla:122542952 54.6842