Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme148318g00001 ATGAGTGAGCAAGATGTAACTGAATATAGAAAGAGTTTGGCTATTCGGGTCTCGGGTTTTGATTGTCCTAAGCCAGTAAAAACATTTGAGGATTGTGGGTTTGCTTCACAAATTATGTCTGCTATAAAAAAACAAGGTTATGAGAAGCCAACGTCTATACAATGCCAAGCTTTACCAGTTGTGCTTTCTGGTAGGGATATCATTGGCATAGCGAAAACTGGTTCCGGTAAAACTGCTTCTTTTGTGCTTCCTATGATTGTGCATATCATGGATCAGCCTGAACTTCAGAAGGAGGAAGGTCCTATTGGAGTTATATGTGCACCTACCAGGGAATTGGCACATCAGATATATCTTGAGGCGAAGAAATTTGCTAAAGCATATGGTATACGTGTCTCTGCTGTCTATGGTGGAATGTCAAAACTTGAACAGTTCAAAGAACTCAAAGCAGGCTGTGAGATAGTTGTTGCTACACCGGGGAGATTGATAGACATGCTAAAAATGAAGGCATTGACAATGCAAAGAGCAAC 527 0.408 MSEQDVTEYRKSLAIRVSGFDCPKPVKTFEDCGFASQIMSAIKKQGYEKPTSIQCQALPVVLSGRDIIGIAKTGSGKTASFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLEAKKFAKAYGIRVSAVYGGMSKLEQFKELKAGCEIVVATPGRLIDMLKMKALTMQRAT 176
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme148318g00001 176 SMART ultradead3 46 174 IPR014001 -
Trme148318g00001 176 Pfam DEAD/DEAH box helicase 51 173 IPR011545 GO:0003676|GO:0005524
Trme148318g00001 176 PANTHER RNA HELICASE 7 168 - -
Trme148318g00001 176 Gene3D - 1 176 IPR027417 -
Trme148318g00001 176 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 9 173 IPR027417 -
Trme148318g00001 176 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 58 176 IPR014001 -
Trme148318g00001 176 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 27 55 IPR014014 GO:0003724
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme148318g00001 Trme-Chr148318 1 527 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme148318g00001 21 170 Eukaryotic Initiation Factors Gene Family AT3G19760 32.667 2.71e-22 90.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme148318g00001 K12835 - gmx:100814854 337.806