Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme148274g00001 ATGGAGTTAACTGACCACAATAAGGAGTCCTTATTTGATGGTGGTGTATTAGCTCCTCTTCTTCACTTGTTCTTACATAATGATCTTCAGGTTAAAACAGTGGCCACAAAAGCTCTTAGGAATTTATCTAGTTTAAAGACAAATGGACTAGAAATGATTCGACAAAGGGCCGTGCGGCCGTTGCTTGACCTCCTTTTCCACCATAGCATACATACATCAAGTTTATGGGAAGATGTAGCAGCCATAATTATGCAACTTGCTGCATCAACTATCTCTCAAGATGCTCAAACACCAGTTTTATTGCTAGATTCTGATGATGATGTTTTTAACCTTTTCCCTCTTGTCAGCGTGACACAACCTGGTGTGCAACAAAACATTATCCAGACCTTTTATGTCTTGTGTCAGTCACCCTCATCTTCACATATCAGAACCAAGCTAAATCAGGTATGA 450 0.3978 MELTDHNKESLFDGGVLAPLLHLFLHNDLQVKTVATKALRNLSSLKTNGLEMIRQRAVRPLLDLLFHHSIHTSSLWEDVAAIIMQLAASTISQDAQTPVLLLDSDDDVFNLFPLVSVTQPGVQQNIIQTFYVLCQSPSSSHIRTKLNQV 149
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme148274g00001 149 Pfam Armadillo/beta-catenin-like repeat 5 44 IPR000225 GO:0005515
Trme148274g00001 149 Gene3D - 2 146 IPR011989 -
Trme148274g00001 149 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 15 57 IPR000225 GO:0005515
Trme148274g00001 149 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 1 148 - -
Trme148274g00001 149 SUPERFAMILY ARM repeat 4 138 IPR016024 -
Trme148274g00001 149 SMART arm_5 4 44 IPR000225 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme148274g00001 Trme-Chr148274 25 474 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme148274g00001 1 67 U-box Gene Family AT2G23140 28.358 3.85e-06 43.5