Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme148186g00001 AAAAAACAGTACCGCCGTCTCGCTCTCCTCCTTCATCCCGACAAAAGCCGATTTCATTTCGCCGATCACGCTTTCAAGCTCGTCGCTGATGCTTGGGCTGTTCTCTCCGATCCAATTAAGAAATCTCATTACGATAAAGATCTATCGTTTTTTGCTCGTGTTGATTTATCGGTTCCCGGTTGGGTTCAGCAAGATAAGTTACCGGTTCGAAGAACCGGTCCTAGTCCTGGTACTGGGTCTGGTGTTGGACCCGGACCCGGTACTGGTCCACGGAACAGTGCGGCTTCTGCTAGAGATGAGATAGCGGCAGATGTTCGTAGGAACGCGACGTTTTGGACGGCGTGTCCTTACTGTTACCGTTTGTATGAGTACCCTAAGGTTTATGAGGGTTACTGTTTGAAATGTCCTAATTGTGAGAGATCTTTTCACGGTGTTAATGTTCCGTCTTTGCCGCCGTTAGTTCCGGGGCAAGAAGCTTATTATTGTTGCTGGGGTTTTTTCCCTATGGGGTTTGTGCATGGTGGTTCTGTTGAGAAAGAGGCTGAGCTGG 550 0.4873 KKQYRRLALLLHPDKSRFHFADHAFKLVADAWAVLSDPIKKSHYDKDLSFFARVDLSVPGWVQQDKLPVRRTGPSPGTGSGVGPGPGTGPRNSAASARDEIAADVRRNATFWTACPYCYRLYEYPKVYEGYCLKCPNCERSFHGVNVPSLPPLVPGQEAYYCCWGFFPMGFVHGGSVEKEAEL 183
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme148186g00001 183 CDD DnaJ 1 37 IPR001623 -
Trme148186g00001 183 MobiDBLite consensus disorder prediction 67 98 - -
Trme148186g00001 183 PRINTS DnaJ domain signature 4 19 IPR001623 -
Trme148186g00001 183 PRINTS DnaJ domain signature 20 40 IPR001623 -
Trme148186g00001 183 ProSiteProfiles dnaJ domain profile. 1 48 IPR001623 -
Trme148186g00001 183 SUPERFAMILY Chaperone J-domain 1 48 IPR036869 -
Trme148186g00001 183 SMART dnaj_3 1 40 IPR001623 -
Trme148186g00001 183 Gene3D DnaJ domain 1 51 IPR036869 -
Trme148186g00001 183 PANTHER CHAPERONE DNAJ-DOMAIN SUPERFAMILY PROTEIN 1 175 - -
Trme148186g00001 183 Pfam DnaJ domain 1 45 IPR001623 -
Trme148186g00001 183 ProSitePatterns Nt-dnaJ domain signature. 25 44 IPR018253 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme148186g00001 Trme-Chr148186 1 550 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme148186g00001 1 178 SUVH1 or 3-interacting DNAJ domain-containing protein superfamily AT2G01710 47.486 1.65e-55 177
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme148186g00001 - - cam:101502408 325.094