Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme148106g00001 AGCACATCTCGAGATGCAGAAAATCCGGGAAACAATTTGTACGTGACAGGACTGTCTCCTAGGATTACCAAGAGAGAACTGGAAAAGCATTTTGCTACTGAGGGAAAAGTTGTAGACGTCCATCTGGTTGTTGATCCATGGACAAGGGAGTCACGTGGTTTTGGATTTGTGACAATGGCGACTTTAGAAGAAGCTGATCGATGTGTGAAGTATCTGAATCGCTCTGTACTTGAAGGGCGTGTTATCATGGTGGAGAAG 258 0.4496 STSRDAENPGNNLYVTGLSPRITKRELEKHFATEGKVVDVHLVVDPWTRESRGFGFVTMATLEEADRCVKYLNRSVLEGRVIMVEK 86
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme148106g00001 86 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 13 82 IPR000504 GO:0003723
Trme148106g00001 86 CDD RRM_SF 13 85 - -
Trme148106g00001 86 SUPERFAMILY RNA-binding domain, RBD 5 85 IPR035979 GO:0003676
Trme148106g00001 86 Gene3D - 1 86 IPR012677 -
Trme148106g00001 86 SMART rrm1_1 12 85 IPR000504 GO:0003723
Trme148106g00001 86 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 11 86 IPR000504 GO:0003723
Trme148106g00001 86 PANTHER TRANSFORMER-2 SEX-DETERMINING PROTEIN-RELATED 7 86 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme148106g00001 Trme-Chr148106 188 445 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme148106g00001 12 84 Eukaryotic Initiation Factors Gene Family AT1G49760 39.726 5.99e-10 52.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme148106g00001 - - vvo:131662224 168.318