Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme147961g00001 TGTTTGTATTTTCTGTTTTTAACGAACGCAGGGCAGCCACGAAGGCATTTGCTTACAACTGGATGGAGTGCATTTGTTAACAAGAAGAAGCTTGTATCTGGAGACGCTGTTCTGTTCCTCAGGGGCGAGGATGGAGAATTGAGATTGGGAGTCCGTAGGGCAGCTCAATTGAAAAGCGGCAGTAACTTTTCATCTATCTCTGGCCAGCAATTGAATCTTGGAAGCCTTACGGACATAGTTAATGCTTTATCTACTAGATGTGCTTTTAGCATTCACTACAATCCGAGGTATTTTTATGGCTATTCATGA 309 0.4272 CLYFLFLTNAGQPRRHLLTTGWSAFVNKKKLVSGDAVLFLRGEDGELRLGVRRAAQLKSGSNFSSISGQQLNLGSLTDIVNALSTRCAFSIHYNPRYFYGYS 102
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme147961g00001 102 SUPERFAMILY DNA-binding pseudobarrel domain 10 54 IPR015300 -
Trme147961g00001 102 Pfam B3 DNA binding domain 11 54 IPR003340 GO:0003677
Trme147961g00001 102 Gene3D - 3 55 IPR015300 -
Trme147961g00001 102 ProSiteProfiles B3 DNA-binding domain profile. 1 55 IPR003340 GO:0003677
Trme147961g00001 102 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 10 96 IPR044835 GO:0003677|GO:0006355|GO:0009725
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme147961g00001 Trme-Chr147961 3 400 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme147961g00001 11 96 B3 DNA Binding Superfamily AT2G33860 63.953 1.62e-33 118
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Trme147961g00001 B3 1.1e-08 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme147961g00001 K14486 - gmx:100796970 155.992