Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme147677g00001 ATGGTTGTGTACAACCAGGGGATGTTCAAGACTGAGCTGTGTAACAAATGGCAGGAAACTGGCACTTGCCCTTATGGAGATCACTGCCAATTCGCTCACGGCATTGGGGAGCTTCGCCCAGTGATCCGCCACCCACGCTACAAGACTGAGGTATGCAGGATGGTCCTTGCTGGGGTCATGTGCCCGTATGGCCATAGATGCCATTTCCGTCATGCACTTACTGAACAAGAGAAAGCTTTATCACAACCTAAGCCCAGATCAATGAAGCTGGAAAGATAA 279 0.5018 MVVYNQGMFKTELCNKWQETGTCPYGDHCQFAHGIGELRPVIRHPRYKTEVCRMVLAGVMCPYGHRCHFRHALTEQEKALSQPKPRSMKLER 92
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme147677g00001 92 ProSiteProfiles Zinc finger C3H1-type profile. 46 74 IPR000571 GO:0046872
Trme147677g00001 92 SMART c3hfinal6 46 73 IPR000571 GO:0046872
Trme147677g00001 92 SMART c3hfinal6 8 35 IPR000571 GO:0046872
Trme147677g00001 92 FunFam zinc finger CCCH domain-containing protein 15-like 2 41 - -
Trme147677g00001 92 PANTHER CCCH ZINC FINGER/TIS11-RELATED 3 83 IPR045877 GO:0003729
Trme147677g00001 92 Gene3D - 3 41 - -
Trme147677g00001 92 Gene3D - 42 79 - -
Trme147677g00001 92 SUPERFAMILY CCCH zinc finger 5 40 IPR036855 GO:0046872
Trme147677g00001 92 ProSiteProfiles Zinc finger C3H1-type profile. 8 36 IPR000571 GO:0046872
Trme147677g00001 92 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 9 34 IPR000571 GO:0046872
Trme147677g00001 92 SUPERFAMILY CCCH zinc finger 42 77 IPR036855 GO:0046872
Trme147677g00001 92 Pfam CCCH-type zinc finger 51 71 IPR041367 -
Trme147677g00001 92 FunFam Zinc finger protein 36, C3H1 type-like 1 42 78 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme147677g00001 3 87 C3H Transcription Factor Family AT1G68200 84.884 9.16e-52 162
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Trme147677g00001 zf-CCCH 3.7e-13 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme147677g00001 K18753 - gmx:100819250 197.593