Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme147418g00001 ATGGCTATGGCTGTTGCACAAAGGGATAACAGCATTGAGAGACACATTGATTCTTCTGGGAAATATGTGCGGTACACTGCTGAACAGATTGAAGCTTTGGAAAAGGTTTATGTGGAATGCCCCAAACCAAGTTCATTGAGAAGGCAACAGCTGATTCGAGAGAATCCGGTTTTGTCCAACATTGAACCTAAGCAAATTAAGGTTTGGTTTCAGAATAGAAGGTGTAGGGAGAAGCAGAGAAAAGAGTCTTCTGAGCTTCAGACTTTGAACAGGAGACTTGCAGCAATGAACAAGCTGTTGACGGAGGAAAATGATCGGCTGCAGAAACAGGTTTCGCAGCTGGTGAATGAGAATGGATTTATGCGCCAGCAAATTAACAC 380 0.4342 MAMAVAQRDNSIERHIDSSGKYVRYTAEQIEALEKVYVECPKPSSLRRQQLIRENPVLSNIEPKQIKVWFQNRRCREKQRKESSELQTLNRRLAAMNKLLTEENDRLQKQVSQLVNENGFMRQQINT 127
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme147418g00001 127 Pfam Homeodomain 21 79 IPR001356 GO:0003677
Trme147418g00001 127 Gene3D - 14 90 - -
Trme147418g00001 127 CDD homeodomain 21 81 IPR001356 GO:0003677
Trme147418g00001 127 SMART HOX_1 18 84 IPR001356 GO:0003677
Trme147418g00001 127 SUPERFAMILY Homeodomain-like 17 82 IPR009057 -
Trme147418g00001 127 Coils Coil 86 124 - -
Trme147418g00001 127 ProSiteProfiles 'Homeobox' domain profile. 16 80 IPR001356 GO:0003677
Trme147418g00001 127 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN ATHB-14 17 126 IPR044830 GO:0003700
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme147418g00001 Trme-Chr147418 75 552 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme147418g00001 1 127 Homeobox Transcription Factor Family AT5G60690 75.573 1.99e-64 207
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-other Trme147418g00001 Homeodomain 4.1e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme147418g00001 K09338 - psat:127095776 226.483