Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme147293g00001 ATGCCAAATGGTAGTCTTGATTATCATTTATTTGGTAAAAGGACACCTCTTGCTTGGAGTGTAAGGCACAAAATAACTCTTGGGTTGGCCTCTAGTGTTCTTTATCTACATGAAGAATGGGAGAGGTGTGTGGTACATAGGGATATTAAATCAAGCAATGTTATGTTAGATTCTAGTTTCAATGTCAAGCTTGGTGATTTTGGGTTGGCTAAATTAATGGATCACGAACTCGGACCGCAAACAACTGGGCTAGCCGGAACATTGGGCTATCTAGCTCCAGAATATGTGAGTACAGGAAGGGCCAGTAAAGAGTCAGATGTGTATAGTTTTGGGATAGTTGTCTTAGAGATAACTACCGGAAAGAAAGCTACTGAAGTTATGAAGGAAAAAGATGGAGGAGAGAAAG 406 0.4039 MPNGSLDYHLFGKRTPLAWSVRHKITLGLASSVLYLHEEWERCVVHRDIKSSNVMLDSSFNVKLGDFGLAKLMDHELGPQTTGLAGTLGYLAPEYVSTGRASKESDVYSFGIVVLEITTGKKATEVMKEKDGGEK 135
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme147293g00001 135 Pfam Protein kinase domain 2 125 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme147293g00001 135 ProSitePatterns Serine/Threonine protein kinases active-site signature. 44 56 IPR008271 GO:0004672|GO:0006468
Trme147293g00001 135 PANTHER - 1 123 - -
Trme147293g00001 135 Gene3D Transferase(Phosphotransferase) domain 1 1 134 - -
Trme147293g00001 135 SUPERFAMILY Protein kinase-like (PK-like) 1 127 IPR011009 -
Trme147293g00001 135 SMART serkin_6 1 128 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme147293g00001 135 FunFam Lectin-domain containing receptor kinase A4.3 1 134 - -
Trme147293g00001 135 ProSiteProfiles Protein kinase domain profile. 1 135 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme147293g00001 Trme-Chr147293 11 416 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme147293g00001 1 125 Receptor kinase-like Gene Family AT5G10530 81.600 7.20e-71 222
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_L-LEC Trme147293g00001 Pkinase 1e-26 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme147293g00001 - - qsa:O6P43_025188 235.343