Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme1471g00001 ATGGGTTTAACATCATCCTCAAAAGTTTACAACTTTTCATCTTCTGTTTGTTCATGGAAAGGTGTTTTCTGTGATTCAAATAAAGAACATGTTGTTAAGTTAAATCTTTCTGGTATTGGTCTCACTGGTCCTATTCCTGATACAACCTTAGGAAAACTTAGCAAACTTCAATCTTTGGATCTTAGCAAAAACAAAATCACTTCTTTGCCTTCAGATTTTTGGAGTTTAAACTCTCTCAAAAGCCTTAACCTTTCTTCCAATCAAATTTCAGGTTCATTAACTAACAACATTGGAAACTTTGGTTTACTTGAAAACTTTGACTTGTCAAAAAACAATTTCTCTGATGAAATTCCTGAAGCTTTGAGTTCACTTGTGAATTTGAAGGTTCTCAAACTTGACCACAACATGTTTGTTAAAAGTATTCCTTCAGGAATTCTCAAGTGTGAGTCTCTAGTTTCAATTGACCTTTCATCAAATCAACTGAGTGGAACACTTCCACATGGTTTTGGTGATGCTTTTCCTAAGCTTAGGACAATGAATCTTGCTGAGAATAATATCGATGGAGGTGTCTCGGATTTTTCAGGGTTAAAGTCCATTGTGAGTCTTAATATATCAGGAAATTCATTTCAGGGTTCTATTATTGAAGTCTTTGAGTTAAAGTTGGAGGTTTTGGACCTTAGCAGAAACCAATTTCAAGGTCACATTTCTCAGGTACATTACAATTGGTCTCATTTAGTTTATCTGGATTTGTCTGAGAATCAGCTTAGTGGTGAAATTTTCCAAAACTTGAACAATTCACTGAATTTAAAGCACCTTAATCTTGCATGCAATAGATTTACAAGACAGAAATTCCCACTGATTGAAATGCTATTAGGATTGGAATATCTTAACTTGTCCAAAACTAGTCTTGTTGGTCACATTCCTGACAATATCTCAAAGCTTGGTAATTTGAATGCACTTGATCTTTCTATGAATCATCTTGATGGGAAAATTCCCTTATTGAAGAATAAACACCTCCAAGTTATTGACCTTTCACACAACAATTTGAGTGGACCAGTCCCTTCATCTGTCTTGGAGAATCTCCCAAAGATGAAGAAATACAACTTCTCTTATAATAACTTAACCCTTTGTGCATCAGAAATCAAATCTGATGTCCTGCAAACATCGTTCTTTGGATCAGTTAACAGTTGTCCAATAGCTGCGAATCCGAGTTTTTTCAAAAGAAGAAGAGACACTCACCACAAGGGAATGAAGTTAGCTCTTGTATTGACCATTGCATTGATATTCGCGCTTGCTGGGATTTTGTTTATAGCATTCGGTTGCAGAAGGAAACAGAAAATGTGGGAAGTAAAGCCAGGTTCATACAGAGAAGAACAGAATATCTCAGGTCCATTTTCCTTCCAAACTGATTCAACAACTTGGGTAGCTGATGTGAAACAAGCAACATCAGTTCCAGTAGTAATCTTTGAGAAGCCGTTGTTGAATATAACCTTTGCAGATCTCTTATCTGCAACTTCGAATTTCGATAGAGGTACCCTTTTGGCTGAAGGAAAATTTGGACCTGTTTATAGAGGCTTTCTACCAGGAAATATTCATGTTGCAGTTAAAGTTTTGGTTGTCGGTTCTACATTAACAGATGAAGAAGCTGCTAGAGAGCTTGAGTTTCTTGGTAGAATCAAGCACCCTAATCTAGTTCCTTTAACTGGCTATTGTGTAGCTGGTGATCAAAGAATTGCTATATATGATTACATGGAGAATGGAAACTTGCAAAACCTTCTTTATGATTTGCCACTCGGTGTTCAAAGCACAGATGATTGGAGCACAGACACATGGGAAGAAGCTGCTGATAGTAATGGAATTCAGAATGTTGGTTCTGAAGGATTACTCACAACTTGGCGATTTCGACACAAAATCGCTCTTGGAACTGCAAGAGCATTGGCATTTCTTCACCATGGATGCTCTCCTCCAATGATTCACAGAGCTGTTAAAGCTAGCAGTGTTTATTTGGATTATGATTTGGAGCCTAGGTTGTCTGATTTTGGACTTGCAAAGATTTTCGGAAGTGGTTTGGACGAAGAGATTGCGCGTGGTTCGCCTGGTTATGTTCCACCAGAGTTTTCTCAACCGGAATTTGATGACTCTCCAACGCCAAAATCTGATGTATATTGTTTTGGTGTTGTTCTGTTTGAGCTACTAACTGGAAAGAAACCGGTTGGAGATGATTATACCGATGACAAAGAAGCAACGACTTTGGTAAGTTGGGTTAGAGGACTTGTAAGGAAGAATCAAACTTCAAGAGCTATTGATCCTAAAATTCGCGATACAGGATCGGATGAACAAATGGAAGAGGCTCTTAAGATTGGATATCTATGCACAGCTGATTTACCTTTCAAGAGACCAACCATGCAGCAGATAGTTGGACTTCTAAAGGATATTGAACCTACAACTAGTTAG 2454 0.3765 MGLTSSSKVYNFSSSVCSWKGVFCDSNKEHVVKLNLSGIGLTGPIPDTTLGKLSKLQSLDLSKNKITSLPSDFWSLNSLKSLNLSSNQISGSLTNNIGNFGLLENFDLSKNNFSDEIPEALSSLVNLKVLKLDHNMFVKSIPSGILKCESLVSIDLSSNQLSGTLPHGFGDAFPKLRTMNLAENNIDGGVSDFSGLKSIVSLNISGNSFQGSIIEVFELKLEVLDLSRNQFQGHISQVHYNWSHLVYLDLSENQLSGEIFQNLNNSLNLKHLNLACNRFTRQKFPLIEMLLGLEYLNLSKTSLVGHIPDNISKLGNLNALDLSMNHLDGKIPLLKNKHLQVIDLSHNNLSGPVPSSVLENLPKMKKYNFSYNNLTLCASEIKSDVLQTSFFGSVNSCPIAANPSFFKRRRDTHHKGMKLALVLTIALIFALAGILFIAFGCRRKQKMWEVKPGSYREEQNISGPFSFQTDSTTWVADVKQATSVPVVIFEKPLLNITFADLLSATSNFDRGTLLAEGKFGPVYRGFLPGNIHVAVKVLVVGSTLTDEEAARELEFLGRIKHPNLVPLTGYCVAGDQRIAIYDYMENGNLQNLLYDLPLGVQSTDDWSTDTWEEAADSNGIQNVGSEGLLTTWRFRHKIALGTARALAFLHHGCSPPMIHRAVKASSVYLDYDLEPRLSDFGLAKIFGSGLDEEIARGSPGYVPPEFSQPEFDDSPTPKSDVYCFGVVLFELLTGKKPVGDDYTDDKEATTLVSWVRGLVRKNQTSRAIDPKIRDTGSDEQMEEALKIGYLCTADLPFKRPTMQQIVGLLKDIEPTTS 817
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme1471g00001 817 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 70 165 - -
Trme1471g00001 817 SMART LRR_typ_2 124 148 IPR003591 -
Trme1471g00001 817 SMART LRR_typ_2 76 100 IPR003591 -
Trme1471g00001 817 SMART LRR_typ_2 53 75 IPR003591 -
Trme1471g00001 817 SMART LRR_typ_2 290 314 IPR003591 -
Trme1471g00001 817 Gene3D Ribonuclease Inhibitor 142 217 IPR032675 -
Trme1471g00001 817 Gene3D Ribonuclease Inhibitor 218 286 IPR032675 -
Trme1471g00001 817 SUPERFAMILY L domain-like 7 377 - -
Trme1471g00001 817 FunFam Putative LRR receptor-like serine/threonine-protein kinase 469 583 - -
Trme1471g00001 817 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED 175 812 - -
Trme1471g00001 817 Gene3D Transferase(Phosphotransferase) domain 1 584 817 - -
Trme1471g00001 817 PRINTS Leucine-rich repeat signature 56 69 - -
Trme1471g00001 817 PRINTS Leucine-rich repeat signature 76 89 - -
Trme1471g00001 817 FunFam Calmodulin-binding receptor kinase CaMRLK 219 333 - -
Trme1471g00001 817 ProSiteProfiles Protein kinase domain profile. 508 816 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme1471g00001 817 Gene3D Ribonuclease Inhibitor 3 141 IPR032675 -
Trme1471g00001 817 Pfam Leucine Rich repeat 335 351 IPR001611 GO:0005515
Trme1471g00001 817 Pfam Leucine Rich repeat 243 258 IPR001611 GO:0005515
Trme1471g00001 817 ProSiteProfiles Leucine-rich repeat profile. 55 76 IPR001611 GO:0005515
Trme1471g00001 817 Pfam Protein tyrosine and serine/threonine kinase 512 807 IPR001245 GO:0004672|GO:0006468
Trme1471g00001 817 Gene3D Ribonuclease Inhibitor 287 399 IPR032675 -
Trme1471g00001 817 SMART LRR_sd22_2 53 71 - -
Trme1471g00001 817 SMART LRR_sd22_2 242 265 - -
Trme1471g00001 817 SMART LRR_sd22_2 336 363 - -
Trme1471g00001 817 SUPERFAMILY Protein kinase-like (PK-like) 485 809 IPR011009 -
Trme1471g00001 817 Gene3D Phosphorylase Kinase; domain 1 468 583 - -
Trme1471g00001 817 Pfam Leucine rich repeat 150 208 IPR001611 GO:0005515
Trme1471g00001 817 Pfam Leucine rich repeat 31 89 IPR001611 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme1471g00001 Trme-Chr1471 326 2779 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme1471g00001 41 812 Receptor kinase-like Gene Family AT5G07280 33.010 2.47e-109 360
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-VII-2 Trme1471g00001 PK_Tyr_Ser-Thr 3.4e-30 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme1471g00001 - - gmx:100797738 1323.53