Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme147073g00001 GCTGGAGATATCGTGCGCGCATACGTGAAAGGCACTCGAACCGAGTGGATGCCACTGAGCCGAAACTGGGGTCAGAACTGGCAATCCAACGCGGTTTTGGTGGGCCAGGCACTGTCTTTTCGTGTCTCAAGTAGTGACCGTCGATCTTCAACATCATGGAATATTGCTCCACCTAGTTGGCAATTTGGTCAAACTTTCACAGGAAAGAATTTTCGAGTTTAA 222 0.491 AGDIVRAYVKGTRTEWMPLSRNWGQNWQSNAVLVGQALSFRVSSSDRRSSTSWNIAPPSWQFGQTFTGKNFRV 73
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme147073g00001 73 Gene3D - 1 71 IPR036749 -
Trme147073g00001 73 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 1 68 IPR007117 -
Trme147073g00001 73 Pfam Expansin C-terminal domain 1 57 IPR007117 -
Trme147073g00001 73 SUPERFAMILY PHL pollen allergen 1 68 IPR036749 -
Trme147073g00001 73 PRINTS Expansin signature 25 46 IPR002963 GO:0009664
Trme147073g00001 73 PRINTS Expansin signature 54 70 IPR002963 GO:0009664
Trme147073g00001 73 PRINTS Expansin/Lol pI family signature 54 68 IPR007118 GO:0005576
Trme147073g00001 73 PRINTS Expansin/Lol pI family signature 16 30 IPR007118 GO:0005576
Trme147073g00001 73 PANTHER EXPANSIN-A15 1 71 IPR002963 GO:0009664
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme147073g00001 Trme-Chr147073 96 317 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme147073g00001 1 73 Expansin Gene Family AT2G39700 83.562 4.26e-39 127
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme147073g00001 - - gmx:100809139 137.117