Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme1469847g00001 ATGGATAGTGAGGTGGCAGGTGATGCAGCTGTTAGGACCGTGGGGTCCACTGCTGTTGTGGCAGTTGTTTCCCCGACGGAGATTGTTGTCGCAAATTGTGGCGATTCTAGAGCGGTTATGGGAAGAGCCGGCGAAGCTGTGGACTTGTCTACTGATCATAAA 162 0.5247 MDSEVAGDAAVRTVGSTAVVAVVSPTEIVVANCGDSRAVMGRAGEAVDLSTDHK 54
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme1469847g00001 54 Gene3D - 1 54 IPR036457 -
Trme1469847g00001 54 SUPERFAMILY PP2C-like 10 54 IPR036457 -
Trme1469847g00001 54 ProSiteProfiles PPM-type phosphatase domain profile. 1 54 IPR001932 -
Trme1469847g00001 54 Pfam Protein phosphatase 2C 10 54 IPR001932 -
Trme1469847g00001 54 PANTHER PROTEIN PHOSPHATASE 2 54 IPR015655 GO:0004722|GO:0006470
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme1469847g00001 Trme-Chr1469847 1 162 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme1469847g00001 14 54 PP2C-type Phosphatase Gene Family AT1G07430 73.171 4.42e-15 65.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme1469847g00001 K14497 - gmx:100818568 80.4925