Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme14658g00001 ATGGTTTCTCTTACTAGTTTATGGCTTCATGGAAACAGGTTCACTGGTTCGATTCCGGAGAATATTGGTGATTTGGTTTCTCTAAAAGATCTTAATCTTAATGGTAATGAACTTGTTGGACTTGTTCCTAAGTCTTTAGGTGATTTGGAATTGGATAATCTTGATTTGAATAATAATCGGTTTATGGGTCCGATTCCGAGTTTTAAAGCTTCTAAAGTTTCTTATAGTAACAATGATTTTTGTTTGAATCAAACTGGTGTTAGTTGTTCTTTTGAAGTTATGGCTCTTTTGGGTTTTCTAGGTGGGTTGAATTATCCTTCAAATTTAGTTGATTCATGGATTGGGAATAACCCTTGTGAGAGTTGGTTGGGGATAAAATGTAATACTGATGGTAAAGTTTCTATGATTAATATGCAGCATTTTAATCTTAATGGTACTTTAAGTCCTTCTGTTGCAAATTTAGGTTCTTTAGCTGAAATCAGATTGAAGGGTAATAATCTCAATGGTGTAGTGCCTAGTAATTGGACTGGATTGATGAAGTTGAATTTGTTGGATCTAACTGACAATAATATTTCTCCTCCTATGCCGGTTTTTAGTAATGGATTGAAACCTATGGTTGATGGGAATTCTCTGCTGAATGGTGGTGGTAGCTCCAACAGTCCTTCATCGGGGAAAAACAGTACATCGGGTGGATCTGGGATTATTGGTGGAGATACACATGGACACTCGAATTCAAGTTCAAGTGATTCGGTTGAAACGAAAAAATCCAAAAGGAAAGGGTTGGTTTTGATTGTAGCTCCCATTGCTGGTGTGGCGGCTGCTGCTTTTCTGTTGATACCGCTTTACGCGTATTGTTTCAGAAGGACAAAGGATGGCTTCCAGGCTCCAAGTTCACTCGTAGTTCACCCTAGAGATCCATCTGATTCAGACAGTACCGTAAAGATAGCTATTGCTAATAATGCCAATGGAAGTGTTTCCACTTTGACAGGGAGTGGAACCGGGAGTAGAAATAGCAGTGCAATTGGCGATTCTCATGCCATTGAAGCTGGAAATCTTGTCATATCCGTTCAAGTTCTAAGAAACGTGACAAAGAATTTCGCTCCTGAGAACGAGCTTGGCCGCGGTGGATTCGGAGTTGTTTATAAAGGAGAGTTGGATGATGGGACTAAGATTGCGGTAAAAAGAATGGAAGCGGGTGTGATCACCAATAAAGCCTTGGATGAATTTCAGGCTGAAATTGCAGTTCTGTCGAAAGTTCGACATCGGCATCTAGTTGCCCTTATTGGTTACTCCATTGAAGGTAATGAGAGGATTCTAGTGTATGAGTATATGCCACAAGGTGCTCTCAGCCAGCATCTTTTCCATTGGAAGAGCTTTGGACTTGAGCCTCTCTCTTGGAAGAGGAGGCTCAATATTGCATTGGATGTTGCTAGAGGAATGGAGTATCTTCATAC 1454 0.4017 MVSLTSLWLHGNRFTGSIPENIGDLVSLKDLNLNGNELVGLVPKSLGDLELDNLDLNNNRFMGPIPSFKASKVSYSNNDFCLNQTGVSCSFEVMALLGFLGGLNYPSNLVDSWIGNNPCESWLGIKCNTDGKVSMINMQHFNLNGTLSPSVANLGSLAEIRLKGNNLNGVVPSNWTGLMKLNLLDLTDNNISPPMPVFSNGLKPMVDGNSLLNGGGSSNSPSSGKNSTSGGSGIIGGDTHGHSNSSSSDSVETKKSKRKGLVLIVAPIAGVAAAAFLLIPLYAYCFRRTKDGFQAPSSLVVHPRDPSDSDSTVKIAIANNANGSVSTLTGSGTGSRNSSAIGDSHAIEAGNLVISVQVLRNVTKNFAPENELGRGGFGVVYKGELDDGTKIAVKRMEAGVITNKALDEFQAEIAVLSKVRHRHLVALIGYSIEGNERILVYEYMPQGALSQHLFHWKSFGLEPLSWKRRLNIALDVARGMEYLHT 485
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme14658g00001 485 MobiDBLite consensus disorder prediction 211 250 - -
Trme14658g00001 485 FunFam Leucine-rich repeat receptor-like kinase 91 214 - -
Trme14658g00001 485 Gene3D Phosphorylase Kinase; domain 1 330 443 - -
Trme14658g00001 485 Gene3D Transferase(Phosphotransferase) domain 1 444 485 - -
Trme14658g00001 485 PANTHER OSJNBA0070M12.3 PROTEIN 1 485 - -
Trme14658g00001 485 Gene3D Ribonuclease Inhibitor 92 213 IPR032675 -
Trme14658g00001 485 Pfam Leucine rich repeat 3 61 IPR001611 GO:0005515
Trme14658g00001 485 ProSitePatterns Protein kinases ATP-binding region signature. 372 394 IPR017441 GO:0005524
Trme14658g00001 485 SMART tyrkin_6 366 485 IPR020635 GO:0004713|GO:0006468
Trme14658g00001 485 SUPERFAMILY L domain-like 3 197 - -
Trme14658g00001 485 Pfam Leucine rich repeat N-terminal domain 94 128 IPR013210 -
Trme14658g00001 485 Gene3D Ribonuclease Inhibitor 1 91 IPR032675 -
Trme14658g00001 485 ProSiteProfiles Protein kinase domain profile. 366 485 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme14658g00001 485 SUPERFAMILY Protein kinase-like (PK-like) 346 484 IPR011009 -
Trme14658g00001 485 MobiDBLite consensus disorder prediction 209 253 - -
Trme14658g00001 485 FunFam receptor protein kinase TMK1 328 443 - -
Trme14658g00001 485 Pfam Protein tyrosine and serine/threonine kinase 369 484 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme14658g00001 Trme-Chr14658 1 1454 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme14658g00001 1 78 Receptor kinase-like Gene Family AT1G55610 42.353 2.71e-07 51.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-IX Trme14658g00001 PK_Tyr_Ser-Thr 6.8e-21 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme14658g00001 K00924 - gmx:100305366 671.774