Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme14646g00001 ATGAAAGGGCACTCTAGCTTAGAAAGTTCAAGTTATGGCAAGAAGATGATTGAAGCAAATGCAAAACTTACCAATGTTGATTTGGAAAGAGAAGATGAATGTGGGATTTGCTTAGAACCATGCACCAAAATGGTTTTGCCTAATTGCTGTCATGCTATGTGTATCAAATGCTACCGCAAGTGGAACACAAAGTCAGAGTCTTGTCCATTTTGTCGTGGTAGCATAAGAAGAGTAAATTCTGAGGATTTATGGGTACTCACTTGTAACGAAGATGTAGTCGATACTGAAACTGTTTCCAAAGAGGACTTGTTGCGATTCTATCTTTATATCAACAGCTTACCTAAAGATTATCCAGATGCACTTTTCTTAATGTATTATGAATACTTAATTTGA 393 0.3639 MKGHSSLESSSYGKKMIEANAKLTNVDLEREDECGICLEPCTKMVLPNCCHAMCIKCYRKWNTKSESCPFCRGSIRRVNSEDLWVLTCNEDVVDTETVSKEDLLRFYLYINSLPKDYPDALFLMYYEYLI 130
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme14646g00001 130 ProSiteProfiles Zinc finger RING-type profile. 34 72 IPR001841 -
Trme14646g00001 130 PANTHER RING FINGER PROTEIN 41, 151 20 128 - -
Trme14646g00001 130 ProSitePatterns Zinc finger RING-type signature. 49 58 IPR017907 -
Trme14646g00001 130 Pfam Ring finger domain 32 72 IPR001841 -
Trme14646g00001 130 SMART ring_2 34 71 IPR001841 -
Trme14646g00001 130 SUPERFAMILY RING/U-box 24 77 - -
Trme14646g00001 130 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 6 83 IPR013083 -
Trme14646g00001 130 FunFam RING/U-box superfamily protein 15 81 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme14646g00001 Trme-Chr14646 596 1258 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme14646g00001 33 89 C3H Transcription Factor Family AT5G05810 37.097 2.60e-06 43.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme14646g00001 - - gmx:100790422 256.914