Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme146455g00001 AAGGTTGCTGTCTTTTATGGTGGTGTCAACATTAAAGTTCACAAGGATCTGCTGAAAAATGAATGCCCTCATATTGTTGTTGGTACACCTGGAAGAATACTAGCATTGGCCAGGGATAAGGACCTTTCTTTGAAGAATGTTAGGCATTTCATTTTGGATGAATGCGATAAGATGCTGGAATCACTGGACATGAGGAAAGATGTGCAAGATATTTTCAAGATGACTCCCCACGATAAGCAAGTTATGATGTTTTCTGCAACACTCAGCAAGGAAATTCGCCCAGTCTGCAAGAAGTTTATGCAAGAT 306 0.402 KVAVFYGGVNIKVHKDLLKNECPHIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLESLDMRKDVQDIFKMTPHDKQVMMFSATLSKEIRPVCKKFMQD 102
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme146455g00001 102 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 1 102 IPR014001 -
Trme146455g00001 102 Pfam DEAD/DEAH box helicase 2 92 IPR011545 GO:0003676|GO:0005524
Trme146455g00001 102 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1 102 IPR027417 -
Trme146455g00001 102 Gene3D - 1 102 IPR027417 -
Trme146455g00001 102 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 1 100 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme146455g00001 Trme-Chr146455 150 555 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme146455g00001 1 102 Eukaryotic Initiation Factors Gene Family AT5G11170 94.118 1.26e-68 207
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme146455g00001 K12812 - gmx:100808957 207.994