Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme14639g00001 ATGCCAACAGTGTGGTTTTCTTTGAAGAAGTCACTACATTGCAAATCAGAACCATCAGATGTACATGATCCACAAACAAGGAAACATTTGAGTACAATCTTAACAAAAAGAGGAGGTAGATCAGGTTGTTCAAGGTCAATAGCAAATCTAAAAGATGTTATTCATGGAAGCAAAAGACATATTGAAAAGCCACCAAGTTGCAGTCCAAGATCTATAGGTAGCAGTGAGTTTCTAAACCCAATAACTCATGAAGTTATTTTGAGTAACTCAAGGTGTGAGTTAAAAATCACTGGATTTCAAGAAGGTGTTGGAAACAATGCTAGTGGTAGTAGTAGTTNNNNNNNNNNTNNNNNNNNNNTNNNNNNNNNNACTTTTGTTGGTACTTTAAGACCTGGTACACCTGGTCCTGGAGGACACCCTACAATGCATTACTTTAACCCTTCTTTTAGGACTTCTTCAACTCCTCCAAGGAAATCTCCTTTTCTTTTGTCAGAAGGGTCTGGTTTTCATGGTGCTGCTGCTGGTGTTCATTCAAGTAATAGGATGTCCCTTGAGACAGATTCTAATGGTTCTTCAACTGTTACTTGTCACAAATGTGGTGAACAGTTTAACAAATGGGAAGCTGCTGAAGCTCACCATCTCTCCAAACATGCTGGTAAGTAA 663 0.371 MPTVWFSLKKSLHCKSEPSDVHDPQTRKHLSTILTKRGGRSGCSRSIANLKDVIHGSKRHIEKPPSCSPRSIGSSEFLNPITHEVILSNSRCELKITGFQEGVGNNASGSSSXXXXXXXXXXXTFVGTLRPGTPGPGGHPTMHYFNPSFRTSSTPPRKSPFLLSEGSGFHGAAAGVHSSNRMSLETDSNGSSTVTCHKCGEQFNKWEAAEAHHLSKHAGK 220
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme14639g00001 220 ProSiteProfiles Zinc finger C2H2 type domain profile. 194 220 IPR013087 -
Trme14639g00001 220 ProSitePatterns Zinc finger C2H2 type domain signature. 196 217 IPR013087 -
Trme14639g00001 220 MobiDBLite consensus disorder prediction 124 166 - -
Trme14639g00001 220 MobiDBLite consensus disorder prediction 145 160 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme14639g00001 1 218 C2H2 Transcription Factor Family AT5G54630 57.724 6.65e-75 232
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Trme14639g00001 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme14639g00001 - - lang:109355134 382.489