Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme1462280g00001 GTTCATCGAGATATATCAAGCAAGAATATTCTTCTTGATGTCGAATATGTGGCTCGTGTCTCCCACTTTGGAACAGCTAAGCTTCTTAATCCTAATTCAGCCAATTGGACCTCTTTTGCAGGCACCTTTGGATATGCTGCTCCAGGTTAA 150 0.42 VHRDISSKNILLDVEYVARVSHFGTAKLLNPNSANWTSFAGTFGYAAPG 49
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme1462280g00001 49 ProSiteProfiles Protein kinase domain profile. 1 49 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme1462280g00001 49 Gene3D Transferase(Phosphotransferase) domain 1 1 49 - -
Trme1462280g00001 49 SUPERFAMILY Protein kinase-like (PK-like) 1 48 IPR011009 -
Trme1462280g00001 49 Pfam Protein kinase domain 1 48 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme1462280g00001 49 PANTHER LEUCINE RICH REPEAT KINASE 2 1 48 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme1462280g00001 Trme-Chr1462280 1 150 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme1462280g00001 1 49 Receptor kinase-like Gene Family AT4G08850 67.347 1.15e-18 75.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Trme1462280g00001 Pkinase 3.1e-08 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme1462280g00001 - - lja:Lj5g3v2241200.1 94.7449