Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme14611g00001 ATGGCAATGAACAAGAACCAATTCTATAAGCTTGGATATCAAGCTCTCCCACCTATCATAACTCAAGCTAGTACACTTCATCACCACCCTCCACAACCTGTTTCAGACTATGCTTTTCCAATATTTGCCATTGTTGTTCTCAGCATCATGGCTACCATTTTATTGCTCCTTAGCTACTTCACTTTTTTAACCAAATGTTGTTCAAACTGGAATCAAGTTAACCCAATGAGATGGACTTCGGTCCTTCGAGCTCGACAGAACGAGGAAGATCACTTCATAGCATTGTCTCCTACGATATGGAACCGAGGACTAGACGAAGCAGTCATCAGAGAAATCCCAAGTTTTCAGTTTATAAAAGAAGAATGTGAGGATCAAAGTGTGTATGGCTGTGTGGTTTGTTTGACAGAGTTTCAAGAACAAGATGTGATAAAAATTCTCCCTAATTGCAACCATGCTTTTCACTTGGATTGCATTGATATTTGGCTTCAAACCAATTCTAATTGTCCTCTTTGTAGATCAAGCATTTCAGGCAATACAACAACAAACACTTCATTTGACATTATCATAGCACCAAGTTCTTCTCCTCAGGATTCTCAGTTGCTCTCTAACTTGGGTAATGATGAAGATTTTGTGGTCATTGAATTAGGTGGAAGAGAAAATGAGGTTCAACAAGAAAGAAACTATTCAAGGGGAAGCATAGTACATAGTAGAAATTATCACTCTGCAAGGAAAATGAAACCAATTAAGTGTCACCATGTTTCCATCATGGGAGATGAGTACATTGATATCATCAGAAAGAAAGATGACACGTTTTCGATTCAGCCGATTCGAAGATCTTTCTCAATGGATTCTGCAAATGATAGACAAGTTTTTATNNNTNNNNNNNNNNTTATACAACAAAATAGGTACAACCAGAATGATGCTAGTGCAAGTGAGGATTGTAATAGCAGAACTAAAAGAGCATTCTTGCCATTTTGTTATGGAAAGGAATCCAAAAATGCATTCCTTCCCTTAGGTGAATGA 1023 0.3724 MAMNKNQFYKLGYQALPPIITQASTLHHHPPQPVSDYAFPIFAIVVLSIMATILLLLSYFTFLTKCCSNWNQVNPMRWTSVLRARQNEEDHFIALSPTIWNRGLDEAVIREIPSFQFIKEECEDQSVYGCVVCLTEFQEQDVIKILPNCNHAFHLDCIDIWLQTNSNCPLCRSSISGNTTTNTSFDIIIAPSSSPQDSQLLSNLGNDEDFVVIELGGRENEVQQERNYSRGSIVHSRNYHSARKMKPIKCHHVSIMGDEYIDIIRKKDDTFSIQPIRRSFSMDSANDRQVFXXXXXXIQQNRYNQNDASASEDCNSRTKRAFLPFCYGKESKNAFLPLGE 340
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme14611g00001 340 ProSiteProfiles Zinc finger RING-type profile. 130 172 IPR001841 -
Trme14611g00001 340 CDD RING-H2_EL5-like 130 172 - -
Trme14611g00001 340 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 95 177 IPR013083 -
Trme14611g00001 340 SMART ring_2 130 171 IPR001841 -
Trme14611g00001 340 Pfam Ring finger domain 130 172 IPR001841 -
Trme14611g00001 340 SUPERFAMILY RING/U-box 129 177 - -
Trme14611g00001 340 PANTHER RING-H2 FINGER PROTEIN ATL16 18 338 IPR044600 GO:0016567|GO:0016740
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme14611g00001 Trme-Chr14611 422 1444 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme14611g00001 30 302 C3H Transcription Factor Family AT1G04360 43.269 5.04e-63 203
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme14611g00001 K19041 - gmx:100809883 479.174