Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme14610g00001 ATGTTGGCGAAAGCTTGTGAAAAAGGGGATGGATCTAAGTCCCTGGGTAAGATACTGGCAAGATGGAAAGAATATAATGCCCAACTTGAAGCCTGCAATGATGCAGACAAGCCTGTTCGAAAAGTTGCAGCTAAGGGATCGAAGAAAGGGTGTATGAAAGGTAAAGGAGGGCCTGAAAACTCGCGGTGTAACTATAGAGGTGTTAGGCAGAGGACTTGGGGGAAATGGGTTGCTGAAATCCGCGAGCCTAACCGAGGTAGTAGGCTATGGCTAGGTACTTTTCCAACTGCCATTGGTGCTGCTTTTGCTTATGATGAAGCAGCTAGGGCAATGTATGGTTCTTGTGCTCGTCTCAACTTTCCTAATGTTTCGGTTCCTAGATTCTCCGAGGAATCTTCAAACGATTCTCCAGATGCAAATACTGAATCCATGACAGTGTTGACAAATACTGAATCCATGATAATACCAAATAACTCAGGGATAGGAGGTGACGACGATACTGATATGGAACCTGTTTCCTTATCCGTAAGCGTAAAACAGGAGAATGAGGAAGGTGAATCAGGATAA 567 0.4462 MLAKACEKGDGSKSLGKILARWKEYNAQLEACNDADKPVRKVAAKGSKKGCMKGKGGPENSRCNYRGVRQRTWGKWVAEIREPNRGSRLWLGTFPTAIGAAFAYDEAARAMYGSCARLNFPNVSVPRFSEESSNDSPDANTESMTVLTNTESMIIPNNSGIGGDDDTDMEPVSLSVSVKQENEEGESG 188
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme14610g00001 188 FunFam Ethylene-responsive transcription factor 2 63 122 - -
Trme14610g00001 188 CDD AP2 63 123 IPR001471 GO:0003700|GO:0006355
Trme14610g00001 188 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 2C 6 157 - -
Trme14610g00001 188 PRINTS Ethylene responsive element binding protein signature 87 103 IPR001471 GO:0003700|GO:0006355
Trme14610g00001 188 PRINTS Ethylene responsive element binding protein signature 65 76 IPR001471 GO:0003700|GO:0006355
Trme14610g00001 188 ProSiteProfiles AP2/ERF domain profile. 64 121 IPR001471 GO:0003700|GO:0006355
Trme14610g00001 188 SUPERFAMILY DNA-binding domain 64 121 IPR016177 GO:0003677
Trme14610g00001 188 SMART rav1_2 64 127 IPR001471 GO:0003700|GO:0006355
Trme14610g00001 188 Gene3D AP2/ERF domain 64 123 IPR036955 GO:0003700|GO:0006355
Trme14610g00001 188 Pfam AP2 domain 63 113 IPR001471 GO:0003700|GO:0006355
Trme14610g00001 188 MobiDBLite consensus disorder prediction 148 188 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme14610g00001 Trme-Chr14610 921 1487 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme14610g00001 8 125 AP2-EREBP Transcription Factor Family AT2G40350 59.836 2.91e-48 153
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Trme14610g00001 AP2 3.4e-13 CL0081