Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme14606g00001 ATCACTTGTTGTACTGTTTCTGATGCATGGAATTACTTGTTCAACCAAAATTTTGATATCATTCTCATTGAAGCTCATATGCCAAACAATCATACTACTTTTGATTTTGTTGGACAAATTACTTCACTTTTCAAACTTCCTGTCATCGTGATGTCTCTTGATCACTCGGTGTCTTCTGTTATGAAATCTATTGCCAAAGGGGCTTGCGCATACTGGTCCAAGCCATTGGATGAAAACCAATTCAAGAACATGTGGCAACATGTCGTACGAAACACTTTGAGCCAAAGTCAGCCGCATGTTGTACGGAAGGCTTTGAGCGAAAGTCATGAACTTCCTCATACTCAAACCTTGGAGGTTAAAGGCCATAAAAAACGAGGAAGAGAAGTTGTTGATGTACCAAAACAACCTCTTGCAAAGAAAAACCGATTGTCATGGACACCCGATTTGCACGAACAATTCTTGTTGGCTGTGAATCAACTCGGGGTTAATAATGCTGTGCCGAAAGAAATTCTTAAACGGATGAATTGTCCCGGTTTGACATCAGGACATGTATCTAGCCATTTACAGAAATATAGAAAGTATCTAAATGGCGACATCAACAAATCAAAGTTGAGTAGGGGATATGATTTTCATGGTCACGGCGAAATTTGTAAACAACAACAAAATTGGACTGAAATTGATGATTCCGACATCTTTATTGACTTGTCCGACTTGTTGTCATGA 723 0.39 ITCCTVSDAWNYLFNQNFDIILIEAHMPNNHTTFDFVGQITSLFKLPVIVMSLDHSVSSVMKSIAKGACAYWSKPLDENQFKNMWQHVVRNTLSQSQPHVVRKALSESHELPHTQTLEVKGHKKRGREVVDVPKQPLAKKNRLSWTPDLHEQFLLAVNQLGVNNAVPKEILKRMNCPGLTSGHVSSHLQKYRKYLNGDINKSKLSRGYDFHGHGEICKQQQNWTEIDDSDIFIDLSDLLS 240
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme14606g00001 240 SUPERFAMILY CheY-like 2 106 IPR011006 -
Trme14606g00001 240 SUPERFAMILY Homeodomain-like 138 196 IPR009057 -
Trme14606g00001 240 Gene3D - 1 103 - -
Trme14606g00001 240 PANTHER TWO-COMPONENT RESPONSE REGULATOR 2 195 IPR045279 GO:0009736
Trme14606g00001 240 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 137 196 IPR017930 -
Trme14606g00001 240 ProSiteProfiles Response regulatory domain profile. 1 89 IPR001789 GO:0000160
Trme14606g00001 240 Pfam Myb-like DNA-binding domain 143 192 IPR001005 -
Trme14606g00001 240 NCBIfam myb-like DNA-binding domain, SHAQKYF class 140 193 IPR006447 GO:0003677
Trme14606g00001 240 FunFam Two-component response regulator 137 197 - -
Trme14606g00001 240 Gene3D - 137 197 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme14606g00001 Trme-Chr14606 176 1246 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme14606g00001 18 195 Response Regulator Gene Family AT3G16857 37.441 1.58e-30 117
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-ARR-B Trme14606g00001 Myb_DNA-binding 9.6e-09 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme14606g00001 - - tpra:123923208 298.13