Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme146004g00001 ATGTTACTAACAACTTTCTTCTTTCTCTTCACACTCTCTTCAACAACAACAACAACTAAAGTAGCCTCACACTATTCCTCCTCATCTTCAGAACCATCACCTTCTCAACAAACCTCCTCCCCTTCCTTCTCCGAATGGCGATCTGCACGTGCAACCTACTACGCCGCCATAGATCCACGTGACACAGTCGGCGGCGCGTGCGGTTACGGCGACCTAAATNNNNNNNNNNTNNNNNNNNNNTNNNNNNNNNNTNNNNNNNNNNTNNNNNNNNNNTNNNNNNNNNNTNNNNNNNNNNTNNNNNNNNNNTNNNNNNNNNNTNNNNNNNNNNTNNNNNNNNNNACTTCGATTATCGTCACCGCAACTAACTTCTGTGCACCGAATTATGCATTTACGTCGGAGGAAGGTGGACACTGTAATCCTCCGAATAAGCACTTTGTTCTTCCGATTGATGCTTTTGAGAAGATCGCTATATGGAAAGCTGGTAACATGCCTCTTCAGTATCGTAG 506 0.3557 MLLTTFFFLFTLSSTTTTTKVASHYSSSSSEPSPSQQTSSPSFSEWRSARATYYAAIDPRDTVGGACGYGDLNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTSIIVTATNFCAPNYAFTSEEGGHCNPPNKHFVLPIDAFEKIAIWKAGNMPLQYR 168
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme146004g00001 168 PRINTS Expansin signature 152 165 IPR002963 GO:0009664
Trme146004g00001 168 PRINTS Expansin signature 135 152 IPR002963 GO:0009664
Trme146004g00001 168 PRINTS Expansin signature 116 126 IPR002963 GO:0009664
Trme146004g00001 168 SMART dpbb_1 80 167 IPR007112 -
Trme146004g00001 168 SUPERFAMILY Barwin-like endoglucanases 113 168 IPR036908 -
Trme146004g00001 168 Pfam Lytic transglycolase 114 167 IPR009009 -
Trme146004g00001 168 Gene3D - 104 168 IPR036908 -
Trme146004g00001 168 Gene3D - 29 82 IPR036908 -
Trme146004g00001 168 PANTHER EXPANSIN-A15 114 168 IPR002963 GO:0009664
Trme146004g00001 168 Coils Coil 72 73 - -
Trme146004g00001 168 PRINTS Expansin/Lol pI family signature 45 60 IPR007118 GO:0005576
Trme146004g00001 168 PRINTS Expansin/Lol pI family signature 160 168 IPR007118 GO:0005576
Trme146004g00001 168 PRINTS Expansin/Lol pI family signature 63 81 IPR007118 GO:0005576
Trme146004g00001 168 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 64 168 IPR007112 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme146004g00001 Trme-Chr146004 20 525 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme146004g00001 45 168 Expansin Gene Family AT3G03220 57.258 4.43e-44 145
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme146004g00001 - - gmx:100784516 166.777