Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme14592g00001 GTTGTTGTTGTTGCAATTGTAGAGGAAATTGTGAACCTGATTGTTGAAGGAGGTGCTATTCCGGCTTTGATTAAGCATCTTCAATCTCCTCCGTTGCCTCAAAACGGCAGCGTTCCGAAGCTGTTGCCGTTTGAGCATGAGGTTGAGAAAGGAAGCGCTTTCGCACTTGGACTTCTTGCCGTTAAGCCAGAACATCAACAGCTCATTGTTGATAGTGGTGCCGTAAAGCATCTTGTTGATCTTTTGAAGAGACATAAGAATGGGTTAACATCACGTGCCATTAATAGTCTCATTCGGAGGGCTGCGGATGCGATCACTAACCTTGCTCATGAGAATAGCAGTATTAAAACCCGTGTTAGGACGGAAGGTGGGATTCCACCATTAGTTCATTTGCTTGAATTTGCGGATACAAAGGTGCAAAGAGCAGCTGCTGGTGCATTACGGACCCTGGCTTTTAAAAATGATGAAAATAAGAATCAGATTGTTGAATGCAATGCTCTTCCAACTCTGATTTTGATGCTCCGGTCAGAAGATGCTGCTATTCATTATGAAGCGGTTGGTGTGATTGGAAATCTGGTCCACTCCTCCCCCAATATAAAGAAAGAAGTTATTCTTGCTGGAGCCTTGCAACCTGTTATTGGATTACTTAG 650 0.4369 VVVVAIVEEIVNLIVEGGAIPALIKHLQSPPLPQNGSVPKLLPFEHEVEKGSAFALGLLAVKPEHQQLIVDSGAVKHLVDLLKRHKNGLTSRAINSLIRRAADAITNLAHENSSIKTRVRTEGGIPPLVHLLEFADTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDAAIHYEAVGVIGNLVHSSPNIKKEVILAGALQPVIGLL 216
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme14592g00001 216 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 73 123 IPR000225 GO:0005515
Trme14592g00001 216 Gene3D - 3 96 IPR011989 -
Trme14592g00001 216 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 165 207 IPR000225 GO:0005515
Trme14592g00001 216 SMART arm_5 62 110 IPR000225 GO:0005515
Trme14592g00001 216 SMART arm_5 154 194 IPR000225 GO:0005515
Trme14592g00001 216 SMART arm_5 7 61 IPR000225 GO:0005515
Trme14592g00001 216 SMART arm_5 112 152 IPR000225 GO:0005515
Trme14592g00001 216 SUPERFAMILY ARM repeat 8 216 IPR016024 -
Trme14592g00001 216 Gene3D - 97 216 IPR011989 -
Trme14592g00001 216 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 123 158 IPR000225 GO:0005515
Trme14592g00001 216 PANTHER ARM REPEAT PROTEIN INTERACTING WITH ABF2 7 216 IPR044282 -
Trme14592g00001 216 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 18 74 IPR000225 GO:0005515
Trme14592g00001 216 Pfam Armadillo/beta-catenin-like repeat 119 151 IPR000225 GO:0005515
Trme14592g00001 216 Pfam Armadillo/beta-catenin-like repeat 63 87 IPR000225 GO:0005515
Trme14592g00001 216 Pfam Armadillo/beta-catenin-like repeat 154 193 IPR000225 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme14592g00001 Trme-Chr14592 92 1519 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme14592g00001 47 211 U-box Gene Family AT5G42340 30.120 7.46e-10 56.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme14592g00001 - - gmx:100812456 379.407