Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Trme145760g00001 | ATCATGCTCCTTCTCACCTCTCTCTTCTTCCTCTTCCTCGGTTTCGCCGCTTTTCTCCTCCTCAATCTCTTCCTCCTCGCCGGCGCCCTCCACCGTCTCCGTTTCCGTCCGACTCCAACTCGCCGTCTTCAATCTCCCTCTGACGCTTTTCTCCCTCACGAAATCAACAACCTCCCTAATTTCCGTGTCAAAGGATCCGTACCCGTACCCGGACCCGATTCACGATGTGCTGTTTGTTTGGATGGTTTTCGTAATGGTCAGTGGTGTCGAAATCTCGCTGCGTGTGGTCATGTTTTTCACCGTAGATGTATTGACACGTGGCTTCTTAAAGTTGCCACGTGTCCTACTTGTCGTACACCGGTTCGATCTAAACCTGAACCACCTCAATGTTCGGTTTTAGAAGATGAAG | 409 | 0.5086 | IMLLLTSLFFLFLGFAAFLLLNLFLLAGALHRLRFRPTPTRRLQSPSDAFLPHEINNLPNFRVKGSVPVPGPDSRCAVCLDGFRNGQWCRNLAACGHVFHRRCIDTWLLKVATCPTCRTPVRSKPEPPQCSVLEDE | 136 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Trme145760g00001 | 136 | SMART | ring_2 | 76 | 117 | IPR001841 | - | |
| Trme145760g00001 | 136 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 40 | 124 | IPR013083 | - | |
| Trme145760g00001 | 136 | PANTHER | E3 UBIQUITIN-PROTEIN LIGASE ATL42 | 1 | 124 | - | - | |
| Trme145760g00001 | 136 | ProSiteProfiles | Zinc finger RING-type profile. | 76 | 118 | IPR001841 | - | |
| Trme145760g00001 | 136 | SUPERFAMILY | RING/U-box | 72 | 125 | - | - | |
| Trme145760g00001 | 136 | Pfam | Ring finger domain | 75 | 118 | IPR001841 | - |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Trme145760g00001 | 1 | 129 | C3H Transcription Factor Family | AT2G18670 | 41.860 | 7.69e-30 | 104 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Trme145760g00001 | - | - | pvu:PHAVU_003G150700g | 129.798 |