Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme14568g00001 TTTGATGAGATAATATTCAATAAATCTGGTTTAGGTTGTACCCCGTTGCATTGGGCAGCATTAAGAGGACATTCAGAGGCTTGTGCTGTGCTTGTGCATGCTGGGACAAAGGAAGAATTGACGGTGAAGGACAATGCAGGATTCACTCCTGTACAGCTTGCATTTGATAAAGGTCATCGACATGTCGCCCCTTTCCTTGTACGTACCATTGTATTGATAAGGCCATTGTTTGTGTAA 237 0.4304 FDEIIFNKSGLGCTPLHWAALRGHSEACAVLVHAGTKEELTVKDNAGFTPVQLAFDKGHRHVAPFLVRTIVLIRPLFV 78
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme14568g00001 78 Pfam Ankyrin repeats (3 copies) 11 67 IPR002110 GO:0005515
Trme14568g00001 78 SMART ANK_2a 11 42 IPR002110 GO:0005515
Trme14568g00001 78 SMART ANK_2a 46 75 IPR002110 GO:0005515
Trme14568g00001 78 ProSiteProfiles Ankyrin repeat profile. 11 43 IPR002110 GO:0005515
Trme14568g00001 78 Gene3D - 5 70 IPR036770 -
Trme14568g00001 78 PANTHER ANK_REP_REGION DOMAIN-CONTAINING PROTEIN-RELATED 12 66 - -
Trme14568g00001 78 ProSiteProfiles Ankyrin repeat region circular profile. 11 35 - -
Trme14568g00001 78 SUPERFAMILY Ankyrin repeat 9 69 IPR036770 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme14568g00001 12 69 CAMTA Transcription Factor Family AT5G09410 37.097 9.08e-06 40.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme14568g00001 K20032 - gmx:100807263 108.612