Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme14565g00001 CCACTACAAAGGTGCTTTTGGAAGGGACAGATTTCCGGAAGCGGATATGGAATAGCTCAGTTTGCACTTTATGCTTCTTATGCACTCGGTCTTTGGTATGCTTCTTGGCTAGTGAAACACGGAATATCCGACTTCTCTAAAACAATCCGAGTTTTCATGGTCCTCATGGTCTCTGCCAATGGTGCTGCCGAGACTTTAACACTGGCTCCTGACTTCATCAAGGGAGGTAGAGCCATGAGATCAGTCTTTGATCTCCTCGACCGTCGAACCGAGATTGAACCAGATGATCAAGATGCTACTCCTGTTCCTGATCGTCTCCGCGGTGAAGTTGAACTTAAGCATGTGGACTTCTCTTATCCCACTAGACCAGATATGCCGGTTTTCCGTGACCTTAATCTTCGTATCCGAGCTGGCAAAACTCTTGCCCTTGTTGGACCTAGTGGCTGCGGTAAGAGCTCGGTGATTGCACTTATACAGAGATTCTATGATCCAACGTCTGGCCGGGTAATGATTGATGGAAAAGACATCAGAAAATACAACCTCAAGTCCTTAAGAAGACACATTTCTGTAGTACCTCAAGAGCCATGCCTCTTTGCTACTACTATTTATGAAAACATTGCATATGGCCATGACTCAGCAACAGAAGCCGAGATAATCGAAGCAGCAACACTTGCTAATGCTCACAAGTTCATATCTTCTCTACCGGACGGATACAAAACATTTGTAGGGGAGAGAGGGATTCAACTCTCCGGGGGACAAAAACAAAGAATAGCAGTTGCTCGTGCTTTTTTGAGGAAAGCCGAGCTTATGCTTCTCGACGAGGCAACAAGTGCACTTGATGCTGAGTCGGAGAGGTCTGTTCAAGAGGCTCTAGACCGCGCTTCAACGGGAAAAACAACCATCATTGTTGCACATAGGTTATCAACTATAAGGAATGCCAATGTGATNGCTGTGATTGATGATGGTAAAGTAGCTGAACAAGGTTCACATTCACAGTTGATGAAAAATCACCAGGATGGAATATATGCGCGCATGATTCAATTACAAAGGTTTACACACAACGAGGTAATTGGTATGGCATCTAGTTCAACTTCTTCAACATGA 1104 0.4475 PLQRCFWKGQISGSGYGIAQFALYASYALGLWYASWLVKHGISDFSKTIRVFMVLMVSANGAAETLTLAPDFIKGGRAMRSVFDLLDRRTEIEPDDQDATPVPDRLRGEVELKHVDFSYPTRPDMPVFRDLNLRIRAGKTLALVGPSGCGKSSVIALIQRFYDPTSGRVMIDGKDIRKYNLKSLRRHISVVPQEPCLFATTIYENIAYGHDSATEAEIIEAATLANAHKFISSLPDGYKTFVGERGIQLSGGQKQRIAVARAFLRKAELMLLDEATSALDAESERSVQEALDRASTGKTTIIVAHRLSTIRNANVXAVIDDGKVAEQGSHSQLMKNHQDGIYARMIQLQRFTHNEVIGMASSSTSST 367
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme14565g00001 367 SMART AAA_5 137 329 IPR003593 GO:0016887
Trme14565g00001 367 FunFam ABC transporter B family member 19 76 98 - -
Trme14565g00001 367 SUPERFAMILY ABC transporter transmembrane region 8 94 IPR036640 GO:0005524|GO:0016020
Trme14565g00001 367 ProSitePatterns ABC transporters family signature. 249 263 IPR017871 GO:0005524|GO:0016887
Trme14565g00001 367 Gene3D - 101 356 IPR027417 -
Trme14565g00001 367 Pfam ABC transporter 129 277 IPR003439 GO:0005524
Trme14565g00001 367 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 110 346 IPR003439 GO:0005524
Trme14565g00001 367 CDD ABC_MTABC3_MDL1_MDL2 110 349 - -
Trme14565g00001 367 FunFam ABC transporter B family member 1 100 350 - -
Trme14565g00001 367 Gene3D ABC transporter type 1, transmembrane domain 1 97 IPR036640 GO:0005524|GO:0016020
Trme14565g00001 367 PANTHER ATP-BINDING CASSETTE SUB-FAMILY B 2 345 IPR039421 -
Trme14565g00001 367 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 101 349 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme14565g00001 Trme-Chr14565 2 1105 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme14565g00001 1 365 Calmodulin-binding Proteins AT2G36910 85.479 0.0 679
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme14565g00001 K05658 - gmx:100814667 690.649