Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Trme145656g00001 | ACTTGTGAAGAAAGGAAGGAAGTGGAGAAAGCATTGAAGAACATTAGAGTCTTTGTTTGCCACAGAGAAACTGTTCAGAGATACCGTGTCTACGGTTTAACCGAGGAGGCAACTGAAAATATTTGGTTTCCGGATAGAGACGGAAAGAATCTGAGGCTAATGAGTTACTTTAAAGATCACTATAACTATGACATTCAATTCAGAAAGTTGCCATGCTTGCAAATTAGTAGGAGTAAACCTTGTTATCTCCCTATGGAGCTCTGTGTGATCTGTGAAGGACAGAAGTTCCTTGGGAAGTTGTCGGATGATCAGACGGCAAAAATACTGAAGATGGGCTGTCAAAGACCGGGAGAACGAAAAGCCATCATCGAAGGAGTCATGAGAGGAAATGTTGGTCCTACCAGGTAA | 408 | 0.4216 | TCEERKEVEKALKNIRVFVCHRETVQRYRVYGLTEEATENIWFPDRDGKNLRLMSYFKDHYNYDIQFRKLPCLQISRSKPCYLPMELCVICEGQKFLGKLSDDQTAKILKMGCQRPGERKAIIEGVMRGNVGPTR | 135 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Trme145656g00001 | 135 | SUPERFAMILY | PAZ domain | 4 | 128 | IPR036085 | GO:0005515 | |
| Trme145656g00001 | 135 | ProSiteProfiles | PAZ domain profile. | 3 | 92 | IPR003100 | GO:0005515 | |
| Trme145656g00001 | 135 | CDD | PAZ_argonaute_like | 1 | 91 | - | - | |
| Trme145656g00001 | 135 | PANTHER | EUKARYOTIC TRANSLATION INITIATION FACTOR 2C | 7 | 126 | - | - | |
| Trme145656g00001 | 135 | FunFam | Protein argonaute 7 | 1 | 96 | - | - | |
| Trme145656g00001 | 135 | Gene3D | paz domain | 1 | 95 | - | - | |
| Trme145656g00001 | 135 | Pfam | PAZ domain | 5 | 108 | IPR003100 | GO:0005515 |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Trme145656g00001 | 4 | 126 | Eukaryotic Initiation Factors Gene Family | AT1G48410 | 41.732 | 2.49e-25 | 98.2 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Trme145656g00001 | K11593 | - | gmx:100797755 | 262.307 |