Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme1455995g00001 AAGAGCACTGCTCTTCACTGTGCTGCATCGGGTGGGGCTGAAAATGCTGTTGATGCAGCGAAGCTGCTTCTTGCAGCAGGGGCTGATCCCAATTCTGTGGATGCTAATGGGGATCGTCCGTTAGATGTTATTGTTTTTCCCCCTAAGCTTGAATTTGTGAAAAATAGTCTTGAAGAGCTTCTTCAAACTGATGATCCTAG 200 0.465 KSTALHCAASGGAENAVDAAKLLLAAGADPNSVDANGDRPLDVIVFPPKLEFVKNSLEELLQTDDP 66
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme1455995g00001 66 SUPERFAMILY Ankyrin repeat 2 61 IPR036770 -
Trme1455995g00001 66 Gene3D - 1 66 IPR036770 -
Trme1455995g00001 66 Pfam Ankyrin repeats (many copies) 3 42 IPR002110 GO:0005515
Trme1455995g00001 66 ProSiteProfiles Ankyrin repeat profile. 1 35 IPR002110 GO:0005515
Trme1455995g00001 66 ProSiteProfiles Ankyrin repeat region circular profile. 1 34 - -
Trme1455995g00001 66 PRINTS Ankyrin repeat signature 19 33 IPR002110 GO:0005515
Trme1455995g00001 66 PRINTS Ankyrin repeat signature 1 12 IPR002110 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme1455995g00001 Trme-Chr1455995 1 200 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme1455995g00001 1 65 C2H2 Transcription Factor Family AT5G12850 55.385 1.09e-17 73.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme1455995g00001 - - ccaj:109796653 107.842