Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme145403g00001 ATGTATGAAAACATCGAGGAATTTCTTCAAGGGAATTCCCTCATGCCTATAAGGTATTCATACAAAGAAATAAAGAAGATGACTAGAGGTTTTAAGGACAAGTTGGGTGAAGGAGGCTATGGTACAGTTTATAAGGGAAAGCTACGTAGTGGCCCTTTGGTAGCCATAAAGATGTTGGGGAAATCTAAGGGTATTGGAAATGGACAAGATTTCATTAGTGAAGTTGCAACTATAGGA 237 0.384 MYENIEEFLQGNSLMPIRYSYKEIKKMTRGFKDKLGEGGYGTVYKGKLRSGPLVAIKMLGKSKGIGNGQDFISEVATIG 79
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme145403g00001 79 ProSitePatterns Protein kinases ATP-binding region signature. 35 57 IPR017441 GO:0005524
Trme145403g00001 79 Gene3D Phosphorylase Kinase; domain 1 4 79 - -
Trme145403g00001 79 SUPERFAMILY Protein kinase-like (PK-like) 14 77 IPR011009 -
Trme145403g00001 79 ProSiteProfiles Protein kinase domain profile. 29 79 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme145403g00001 79 PANTHER RUST RESISTANCE KINASE LR10-RELATED 3 79 IPR045874 GO:0004672
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme145403g00001 Trme-Chr145403 1 237 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme145403g00001 13 78 Receptor kinase-like Gene Family AT1G66980 47.761 1.58e-16 70.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Trme145403g00001 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme145403g00001 - - tpra:123902866 147.902