Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme145369g00001 ATGAAAGAAGAAAAACAATCTTCGCCTCCGCAGCCGCGACAAATCGCTACTACAACCGGTGAATTTGAAGAAGAAAACAACCAAATTCATACCAAAAATATTACTACTATCAATCCTCTTGTTCCTCCGGTTTCGCTTGAATTAAGGTGTGGTGTTAATATTAATTTCAAGCCCAATAAGCTCAATAAGATTCATGAATGTTCGATTTGCGGCGCGGAATTCACATCAGGTCAAGCATTAGGTGGTCACATGAGGAGACATAGAGCTTCTATTGATAAAAGTAACAACAAAAACAACAACGTTGTAGCTTTTGAAGGTGTTCATGTTAAGTCTAGGAATGTTCTAGAATTGGATCTTAATTTTCCGGCACCGGAGGAAGATCAACCGGATTCGACGTTTCAATTT 405 0.3877 MKEEKQSSPPQPRQIATTTGEFEEENNQIHTKNITTINPLVPPVSLELRCGVNINFKPNKLNKIHECSICGAEFTSGQALGGHMRRHRASIDKSNNKNNNVVAFEGVHVKSRNVLELDLNFPAPEEDQPDSTFQF 135
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme145369g00001 135 PANTHER ZINC FINGER PROTEIN ZAT5 31 128 - -
Trme145369g00001 135 SMART c2h2final6 65 87 IPR013087 -
Trme145369g00001 135 ProSiteProfiles Zinc finger C2H2 type domain profile. 65 92 IPR013087 -
Trme145369g00001 135 MobiDBLite consensus disorder prediction 8 30 - -
Trme145369g00001 135 ProSitePatterns Zinc finger C2H2 type domain signature. 67 87 IPR013087 -
Trme145369g00001 135 Gene3D Classic Zinc Finger 52 114 - -
Trme145369g00001 135 Pfam C2H2-type zinc finger 65 89 - -
Trme145369g00001 135 MobiDBLite consensus disorder prediction 1 30 - -
Trme145369g00001 135 SUPERFAMILY beta-beta-alpha zinc fingers 62 88 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme145369g00001 Trme-Chr145369 1 405 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme145369g00001 39 134 C2H2 Transcription Factor Family AT2G28200 41.322 5.71e-21 84.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Trme145369g00001 zf-C2H2_6 5e-13 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme145369g00001 - - psat:127086554 167.933