Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme1453034g00001 ATGACCGTCGGCGGCAACCCTGCTGGACGCATCGTCTTCGAGCTTTTCGCCGATGTCACTCCCAGAACCGCTGAGAATTTCCGTGCTCTCTGTACCGGCGAGAAAGGTGTCGGACGTAGCGGAAAGCCACTTCACTACAAGGGATCTTCCTTCCACCGTGTGATCCCTAACTTCATGTGTCAGGGAGGTGACTTCACCGC 200 0.565 MTVGGNPAGRIVFELFADVTPRTAENFRALCTGEKGVGRSGKPLHYKGSSFHRVIPNFMCQGGDFTA 67
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme1453034g00001 67 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 15 30 IPR002130 GO:0000413|GO:0003755
Trme1453034g00001 67 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 51 63 IPR002130 GO:0000413|GO:0003755
Trme1453034g00001 67 Pfam Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD 5 66 IPR002130 GO:0000413|GO:0003755
Trme1453034g00001 67 ProSiteProfiles Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain profile. 1 67 IPR002130 GO:0000413|GO:0003755
Trme1453034g00001 67 SUPERFAMILY Cyclophilin-like 2 66 IPR029000 -
Trme1453034g00001 67 ProSitePatterns Cyclophilin-type peptidyl-prolyl cis-trans isomerase signature. 46 63 IPR020892 GO:0003755|GO:0006457
Trme1453034g00001 67 Gene3D - 1 67 IPR029000 -
Trme1453034g00001 67 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE 2 66 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme1453034g00001 Trme-Chr1453034 1 200 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme1453034g00001 9 67 U-box Gene Family AT5G67530 45.763 3.03e-09 49.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme1453034g00001 K01802 - ncol:116248789 138.658