Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme1451g00002 ATGAGAAATGGATCAAATCACACTGATGATGACAGTAACTTGTTTGCTGTAGGAGGAGAAATGAACTTAATGAAGAAAAGGAAAGATTTAGATAATAAACATGACGACAAAGAATTTGGAGATCAAACTTCCATAAAGAAAGCTAGAGTGATTTGGTCTGTGGATCTTCATCAGAAGTTTGTTAAAGCTGTGAATCGAATTGGATTCGATAAAGTTGGTCCGAAGAAAATTCTAGATTTGATGAATGTTCCGTGGCTTACTAGAGAAAATGTAGCTAGTCACTTGCAGAAGTACCGGCTCTACTTGAGTAGGTTGCAAAAGAAAAATGATCAGAAATCTTCCACAGGTCTAAGTTTTCTCAACTCTCTGAACAAGCAACAAAATGATGGTGCAATCGACAACTTCAGATATTCGGATGGGACATTAAAACTTCATATGGATACTACAAGTCATGAAGTTGATCTCAATGGAACTGTGACAAGGCCAACAATAGAAAAAATAAGAGCTTCAATTAGTGATATTACTGATCCAAAGATAAGAAAGAGTTCACAGATAGGCTGTAATCAACCATTTGAATCGGCAGAATCAGAAGCAAATCATACAGTTTATGAATACTCCCCCGTTTCGACACAATGCTCTTGGAATGAAGTTCCAAAAAGGCTACTCAAAAAAGAACAAAATACACAGAAACACTTCCAAATTGATCAACCACTATCAATGAATTCTAATCCCTCCGATTACAAAAGTGATTACGTTAGTCCTGTGAATTCAATGGTGTCGGAAATTGACACATTTCCTAGTCAATCCAAAAGCCTCATCGCGAATGATCAATCTCCAGATATCGTTTTCACTTCAAGTTTGAGTTCGAAAGCACCAGGATATAATCTCGGTTGCATTTCTGATATGGAAATTTACCAAAGAAACCTACTTTTGGATAGCCATGCAGCTTCAACACCTTTGGATGAATACTATAATATGAACTTTGGCATGCAGAATATGGAGATGTCTGAGTATTATGATCCATGGCTTATTGCTGAAGTACCTACCAATTTGTATGATTCAGCAGACTATTCATAG 1077 0.3658 MRNGSNHTDDDSNLFAVGGEMNLMKKRKDLDNKHDDKEFGDQTSIKKARVIWSVDLHQKFVKAVNRIGFDKVGPKKILDLMNVPWLTRENVASHLQKYRLYLSRLQKKNDQKSSTGLSFLNSLNKQQNDGAIDNFRYSDGTLKLHMDTTSHEVDLNGTVTRPTIEKIRASISDITDPKIRKSSQIGCNQPFESAESEANHTVYEYSPVSTQCSWNEVPKRLLKKEQNTQKHFQIDQPLSMNSNPSDYKSDYVSPVNSMVSEIDTFPSQSKSLIANDQSPDIVFTSSLSSKAPGYNLGCISDMEIYQRNLLLDSHAASTPLDEYYNMNFGMQNMEMSEYYDPWLIAEVPTNLYDSADYS 358
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme1451g00002 358 PANTHER HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN-RELATED 25 258 IPR044841 GO:0003700|GO:0006355
Trme1451g00002 358 FunFam Two-component response regulator 43 106 - -
Trme1451g00002 358 SUPERFAMILY Homeodomain-like 44 104 IPR009057 -
Trme1451g00002 358 Gene3D - 43 106 - -
Trme1451g00002 358 Pfam Myb-like DNA-binding domain 52 99 IPR001005 -
Trme1451g00002 358 NCBIfam myb-like DNA-binding domain, SHAQKYF class 47 100 IPR006447 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme1451g00002 Trme-Chr1451 1675 3037 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme1451g00002 10 283 Response Regulator Gene Family AT1G67710 36.213 2.68e-33 126
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Trme1451g00002 Myb_DNA-binding 1.6e-06 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme1451g00002 K14491 - gmx:100778324 443.351