Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme14515g00001 ATGGAGGAGACTACGATTATTGACATCGAAGAAGGAAAATCTTCAAATTCAAAAGACATGTTTGTTTGCGAAATCTGCACGGACACTAAAACAATCAGTGATGCTTTCTGCATCAGCGGTTGCTCTCACGCTTATTGCTCCGATTGCATAGCCATGTATATCGGTTCCAAACTCGAAGATAACATCACCAACATTGTGTGTCCTGTTCCCAGGTGCAGTGGTTCGTTAGACGTGGAGTTTTGTCGCTCGATTCTTCCAGACGGGGTTTTTGAACGATGGGGTGATGCGTTATGTGAGACTTCAATCGATGTAACAGAGATTGTTACGAAAACTGAATGTCCTAGTTGTAACAGGATGTTCTGTGCACAATGTAAGGTTCCATGGCATCAAGGAATCAAATGCAGCGAATTCGAGAAGCTAAATGCCGACGAGAGGGAGAAAGAAGATGTTATGTTGATGAACCTTGCGAAGAATATGGCGTGGAGGCGATGCCCCAAATGCAAATTTTATGTTGCCAAATCTACGGGTTGCGACTCCATGATATGCAGGTTTCTTTCTATTTAA 564 0.4309 MEETTIIDIEEGKSSNSKDMFVCEICTDTKTISDAFCISGCSHAYCSDCIAMYIGSKLEDNITNIVCPVPRCSGSLDVEFCRSILPDGVFERWGDALCETSIDVTEIVTKTECPSCNRMFCAQCKVPWHQGIKCSEFEKLNADEREKEDVMLMNLAKNMAWRRCPKCKFYVAKSTGCDSMICRFLSI 187
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme14515g00001 187 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 13 182 IPR031127 GO:0004842|GO:0016567
Trme14515g00001 187 SUPERFAMILY RING/U-box 17 103 - -
Trme14515g00001 187 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 16 106 IPR013083 -
Trme14515g00001 187 ProSiteProfiles Zinc finger RING-type profile. 23 71 IPR001841 -
Trme14515g00001 187 SUPERFAMILY RING/U-box 98 139 - -
Trme14515g00001 187 SMART ibrneu5 51 134 IPR002867 GO:0008270
Trme14515g00001 187 FunFam RBR-type E3 ubiquitin transferase 18 104 - -
Trme14515g00001 187 Pfam IBR domain, a half RING-finger domain 59 134 IPR002867 GO:0008270
Trme14515g00001 187 ProSiteProfiles TRIAD supradomain profile. 19 187 IPR044066 -
Trme14515g00001 187 SUPERFAMILY RING/U-box 145 182 - -
Trme14515g00001 187 ProSitePatterns Zinc finger RING-type signature. 41 50 IPR017907 -
Trme14515g00001 187 Gene3D - 131 184 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme14515g00001 Trme-Chr14515 654 1217 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme14515g00001 23 184 C3H Transcription Factor Family AT2G19610 24.211 1.83e-13 65.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme14515g00001 K11975 - csav:115705079 242.662