Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme145154g00001 ATGACCTCTAGCTACTCAAATTCTCCATGTGCTGCTTGCAAGTTTCTAAGAAGAAAATGTAATCAAGATTGCATTTTTGCACCTTATTTCCCACCAGAAGAGCCTCATAAGTTTGCCAATGTTCACAAAGTATTTGGTGCAAGTAATGTTAGTAAAATTCTAAATGAAGTTTTACCTCATCAAAGGGAAGATACAGTGAATTCTCTAGCTTATGAAGCTGAAGCAAGGATTAAAGATCCAGTTTATGGTTGTGTTGGATTTATTTCAGGGCTACAAAGACAACTCCTTGGTCTTCAAAAGGAACTTGATGCTACAAATGCTGATTTGATTCAATTTACTATTCAAGGTTCTTCTTCTCTTGGACTTGGACATGTTGATCACTCTCATGATTTTTATAATTACCCTTCTAATTTTGAGCAATGA 423 0.3522 MTSSYSNSPCAACKFLRRKCNQDCIFAPYFPPEEPHKFANVHKVFGASNVSKILNEVLPHQREDTVNSLAYEAEARIKDPVYGCVGFISGLQRQLLGLQKELDATNADLIQFTIQGSSSLGLGHVDHSHDFYNYPSNFEQ 140
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme145154g00001 140 Coils Coil 88 108 - -
Trme145154g00001 140 Pfam Lateral organ boundaries (LOB) domain 9 105 IPR004883 -
Trme145154g00001 140 ProSiteProfiles LOB domain profile. 8 109 IPR004883 -
Trme145154g00001 140 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 7 114 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme145154g00001 Trme-Chr145154 82 504 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme145154g00001 3 113 AS2 family AT3G27650 79.279 1.42e-65 194
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Trme145154g00001 LOB 9.7e-42 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme145154g00001 - - mtr:11421075 248.825