Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme145134g00001 CCAGTTGATGATTTTCAACTTCAAGACCAACTTTCTTTCTTGAATGATGGTTCTGATTCTAGTACTCTTTTTCCTTCATATGGTTATGGAGGTAATTCTCTTCATAGAAGAAGTTGTTCTGTTAATGATGCTTGTTTAGGTTCTGAGGATCCAAATTCTGGTTTAGGATGGAAGCCTTGTCTTTATTTTGCTAGAGGGTACTGTAAAAATGGTACTAGTTGTAGATTTCTTCATGGTGATGTTGATGGTGGTTCTGCTACAATTGTTGGTTCTCCTAATAAGGTTGAGATGATGGATCAGTGTCATCATCATGAACTCTTGAGATCTAAATCTACTCATCAACAAAGATTGGCTGCTGCTTCTCAACTCATGGCCTCTAACTCTTTCCCTTACTCACCAAAGTGCATGAATTTCCTTTTACAGCAGCAACAAAATGATACTCAAAG 446 0.3744 PVDDFQLQDQLSFLNDGSDSSTLFPSYGYGGNSLHRRSCSVNDACLGSEDPNSGLGWKPCLYFARGYCKNGTSCRFLHGDVDGGSATIVGSPNKVEMMDQCHHHELLRSKSTHQQRLAAASQLMASNSFPYSPKCMNFLLQQQQNDTQ 148
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme145134g00001 148 ProSiteProfiles Zinc finger C3H1-type profile. 54 81 IPR000571 GO:0046872
Trme145134g00001 148 Gene3D - 47 146 - -
Trme145134g00001 148 SUPERFAMILY CCCH zinc finger 57 79 IPR036855 GO:0046872
Trme145134g00001 148 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 59 79 IPR000571 GO:0046872
Trme145134g00001 148 PANTHER RNA-BINDING (RRM/RBD/RNP MOTIFS) 6 146 - -
Trme145134g00001 148 SMART c3hfinal6 56 80 IPR000571 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme145134g00001 Trme-Chr145134 100 545 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Trme145134g00001 zf-CCCH 3e-06 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme145134g00001 - - gmx:100797806 246.128