Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme145108g00001 GTGACATCTGTGAAAGTGATTAGGAATAAGCAAACTAGTCAATCAGAAGGTTATGGTTTTATTGAGTTTAATACTCGTGCTTCTGCTGAGAGAGTGCTTCAGACATACCAAGGAACAATTATGCCGAATGGTGGCCAAAGTTACAGATTGAATTGGGCAACTTTCAGTGCCGGTGAGAGGTCCTCTAGGCAGGATGATGGTCCTGATCATACCATTTTTGTTGGAGATTTGGCTGCTGATGTTACTGATTACCTTCTTCAGGAGACTTTTAGGGCTCGTTATAACTCGGTGAAGGGGGCTAAAGTTGTGATTGATAGGCTCACTGGTAGGTCTAAGGGTTATGGTTTTGTTAGATTTGCTGATGAGGGTGAACAGATGAGGGCTATGACTGAGATGCAAGGGGTTCTTTGTTCAACAAGACCAATGAGGATTGGACCAGCTACTAACAAGAACCCT 456 0.4342 VTSVKVIRNKQTSQSEGYGFIEFNTRASAERVLQTYQGTIMPNGGQSYRLNWATFSAGERSSRQDDGPDHTIFVGDLAADVTDYLLQETFRARYNSVKGAKVVIDRLTGRSKGYGFVRFADEGEQMRAMTEMQGVLCSTRPMRIGPATNKNP 152
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme145108g00001 152 CDD RRM2_SECp43_like 69 148 - -
Trme145108g00001 152 Gene3D - 1 54 IPR012677 -
Trme145108g00001 152 Gene3D - 55 152 IPR012677 -
Trme145108g00001 152 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 70 149 IPR000504 GO:0003723
Trme145108g00001 152 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 1 55 IPR000504 GO:0003723
Trme145108g00001 152 PANTHER TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED 1 151 - -
Trme145108g00001 152 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 1 42 IPR000504 GO:0003723
Trme145108g00001 152 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 72 135 IPR000504 GO:0003723
Trme145108g00001 152 SMART rrm1_1 71 145 IPR000504 GO:0003723
Trme145108g00001 152 FunFam Polyadenylate-binding protein RBP45C 61 152 - -
Trme145108g00001 152 SUPERFAMILY RNA-binding domain, RBD 1 150 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme145108g00001 Trme-Chr145108 103 558 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme145108g00001 1 151 Eukaryotic Initiation Factors Gene Family AT4G34110 28.477 6.67e-10 54.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme145108g00001 - - cam:105852306 291.197