Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme14504g00001 ATGGGTTCAAAGGGTGATGTTTGGGGGGTGAGGGGGGGTGGGGTACTGGTGGATCTTAGAACAGGAACATGGGTGCCTTCATCACTACAAATGATAAATGATCTGCCAACTATCTTTGAGCTTGCAACAGGAAATGCTAAGCAATCGAAGGACCAACCAACTGCTCACAACAATGGTAGCAATAGCAAATACAAATCAAGTGGAAAGTCTCGCCAGTCTGAGCCTCAGGCCAAGGGTGTGAAGATGTCGGCACCACCCAAAGAAGAGGATGACAGTGGGGAAGAAGAAGAAGATGATGATGAACAAGGTGCAACCTGTGGTGCTTGTGGTGATAATTATGGCACTGATGAATTTTGGATCTGTTGTGATATGTGCGAGAAATGGTTTCATGGTAAATGTGTTAAAATTACTCCTGCTAAGGCCGAACACATCAAGCAATACAAGTGCCCCGGCTGCAGTATGAAGAG 467 0.4604 MGSKGDVWGVRGGGVLVDLRTGTWVPSSLQMINDLPTIFELATGNAKQSKDQPTAHNNGSNSKYKSSGKSRQSEPQAKGVKMSAPPKEEDDSGEEEEDDDEQGATCGACGDNYGTDEFWICCDMCEKWFHGKCVKITPAKAEHIKQYKCPGCSMK 155
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme14504g00001 155 FunFam PHD finger alfin-like protein 98 154 - -
Trme14504g00001 155 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 95 153 IPR013083 -
Trme14504g00001 155 MobiDBLite consensus disorder prediction 89 104 - -
Trme14504g00001 155 SMART PHD_3 105 153 IPR001965 -
Trme14504g00001 155 MobiDBLite consensus disorder prediction 44 77 - -
Trme14504g00001 155 CDD PHD_AL_plant 106 155 IPR044104 -
Trme14504g00001 155 ProSiteProfiles Zinc finger PHD-type profile. 103 155 IPR019787 -
Trme14504g00001 155 PANTHER CPG BINDING PROTEIN 29 155 IPR045104 GO:0006355|GO:0042393
Trme14504g00001 155 MobiDBLite consensus disorder prediction 44 106 - -
Trme14504g00001 155 SUPERFAMILY FYVE/PHD zinc finger 94 154 IPR011011 -
Trme14504g00001 155 ProSitePatterns Zinc finger PHD-type signature. 106 152 IPR019786 -
Trme14504g00001 155 Pfam PHD-finger 106 154 IPR019787 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme14504g00001 Trme-Chr14504 499 1522 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme14504g00001 29 153 Alfin-like Transcription Factor Family AT1G14510 70.400 4.46e-50 159
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Alfin-like Trme14504g00001 PHD 2.8e-10 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme14504g00001 K26274 - gmx:100807826 221.09