Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Trme144940g00001 | AAGGGGAAGAAGAAGGGAACAAGCTTCGTGATCGATTGCGCGAAGCCAGTTGAAGACAAGATTATGGACATTGCTTCTCTCGAAAAGTTCCTTCAAGAGAGGATTAAGGTTGGTGGTAAAGCTGGTGCTCTTGGTGATTCCGTCACCGTTACTCGTGAGAAGAGTAAGATCACCGTTACCTCCGATAGCAATTTCTCCAAAAGGTAA | 207 | 0.4541 | KGKKKGTSFVIDCAKPVEDKIMDIASLEKFLQERIKVGGKAGALGDSVTVTREKSKITVTSDSNFSKR | 68 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Trme144940g00001 | 68 | Gene3D | - | 1 | 68 | IPR038526 | - | |
| Trme144940g00001 | 68 | PANTHER | 60S RIBOSOMAL PROTEIN L22 | 1 | 68 | IPR002671 | GO:0003735|GO:0005840|GO:0006412 | |
| Trme144940g00001 | 68 | Pfam | Ribosomal L22e protein family | 5 | 68 | IPR002671 | GO:0003735|GO:0005840|GO:0006412 | |
| Trme144940g00001 | 68 | FunFam | 60S ribosomal protein L22-2 | 1 | 68 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Trme144940g00001 | Trme-Chr144940 | 3 | 209 | Dispersed |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Trme144940g00001 | 1 | 68 | Cytoplasmic Ribosomal Protein Gene Family | AT3G05560 | 86.765 | 4.04e-38 | 121 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Trme144940g00001 | K02891 | - | qsa:O6P43_010781 | 130.954 |