Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme144674g00001 ATGTGGTTTTGTCCGCAACTTGTTTGGGAAATAAGAGGTGCAGACTTCACAGTATCCCCAGTTCATCATGCTGCCATTGGTTTAGTTCATCCATCTCGAGGCATCTCAATCAGATTTCCAAGATTTATTAGCAGCGTGTCAGACAGAAACCCAGAAGAATGTAGCACAGCTGCCGATATAGTTGAAATGTTTCAATTGCAGACTCGGAAGATGGATNTCACAACTGAAGGTTGA 234 0.4274 MWFCPQLVWEIRGADFTVSPVHHAAIGLVHPSRGISIRFPRFISSVSDRNPEECSTAADIVEMFQLQTRKMDXTTEG 77
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme144674g00001 77 Pfam ATP dependent DNA ligase C terminal region 2 45 IPR012309 GO:0003910|GO:0006281|GO:0006310
Trme144674g00001 77 PANTHER DNA LIGASE 1/3 FAMILY MEMBER 1 69 - -
Trme144674g00001 77 Gene3D - 1 76 IPR012340 -
Trme144674g00001 77 SUPERFAMILY Nucleic acid-binding proteins 1 67 IPR012340 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme144674g00001 1 67 Core DNA Replication Machinery Family AT1G49250 52.239 3.49e-22 86.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme144674g00001 - - gmx:100807673 144.436