Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme14460g00001 TTTATAATAATAGATTGGGAGAAGGGAGCTGTCTCCCTTGGTCCTAACAAAGAGCCAGCATTTCAAGTCAGTCTCCTCTGGGACTCTGAACATCAGCAGCTAATTGTTGACAATGGTGCCTTAACACACCTTGTGGATCTTTTAAAGAGGCATACAAATGGCTTAACTTCTCGTGCCATTAATAGTCTCATTCGTAGGGCTGCAGATGCTGTTACTAATCTGGCACATGAGAATAGCAACATTAAAACCCATGTCAGGATGGAAGGTGGAATTCCACCACTTGTGCATTTACTTGAATTTTCCGATACAAAGGTGCAAAGAGCAGCTGCCGGTGCGTTGAGAACCCTAGCTTTTAAAAATGACGAAAATAAAAATCAGATTGTTGAATGCAATGCTCTTCCGACTCTGATTCTAATGCTGCGTTCTGAGGATGCTGCTATTCATTATGAAGCG 453 0.4216 FIIIDWEKGAVSLGPNKEPAFQVSLLWDSEHQQLIVDNGALTHLVDLLKRHTNGLTSRAINSLIRRAADAVTNLAHENSNIKTHVRMEGGIPPLVHLLEFSDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDAAIHYEA 151
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme14460g00001 151 Pfam Armadillo/beta-catenin-like repeat 120 151 IPR000225 GO:0005515
Trme14460g00001 151 Pfam Armadillo/beta-catenin-like repeat 81 117 IPR000225 GO:0005515
Trme14460g00001 151 Gene3D - 15 151 IPR011989 -
Trme14460g00001 151 SMART arm_5 28 76 IPR000225 GO:0005515
Trme14460g00001 151 SMART arm_5 78 118 IPR000225 GO:0005515
Trme14460g00001 151 SUPERFAMILY ARM repeat 28 149 IPR016024 -
Trme14460g00001 151 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 89 124 IPR000225 GO:0005515
Trme14460g00001 151 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 39 89 IPR000225 GO:0005515
Trme14460g00001 151 PANTHER ARM REPEAT PROTEIN INTERACTING WITH ABF2 16 151 IPR044282 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme14460g00001 Trme-Chr14460 64 998 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme14460g00001 30 142 U-box Gene Family AT2G23140 27.826 4.11e-06 43.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme14460g00001 - - vvo:131643451 230.72