Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme14438g00001 AACTTATCCAGTCAACTAAACCAGTTTGATATTAGCCACAATAAGATTACAGGGAGCATTCCGGCAGGACTAGGAAATCTCATCAACTTGATTGGCGTGGACATGAAGTTCAACCTTCTCAAAGGCTCCATTCCAGCTTCTTTTGGAAAACTTCAAAAGATACAATCATTGAAACTGAATGTAAACAAATTTTCAGGAGAGATTCCATTATCACTTGGCAACCTTAGTNNNNNNNNNNANNNNNNNNNNANNNNNNNNNNANNNNNNNNNNANNNNNNNNNNANNNNNNNNNNATGCCATATGTTGCATTACCTGGACCTTTCAAATAACCATCTTATTGGAACTATTCCCTTGCAACTCATTGGTCTCCCTTCTTTGTCATTGTTACTCAACTTATCCCACAACTCATTTAATGGAAGCCTACCCTCTGAAGTTGGTAAGCTGAAAAGCATTGATAAGTTGGATGCTTCTGAAAATGTTCTTTCAGGCGAAATTCCTGAAGAAATTGGGGAGTGCATAAGCTTGGAATACCTTAACTTACAAGGGAATTCCTTCCAAGGAGCCATGCCTTCTTCTTTGGCATCATTGAAAGGCCTTCAGTTGGATGGTGAAGTGCCAATAGAAGGCGTGTTTAGAAATGTAAGTGCTATATCATTGAAAAACAACAGTGAACTTTGTGGGGGTATCACAGACCTACATCTACCACCATGCTCTGTCAAAGTCTTTCGGATGAAAAAACCAAACTTGAGAACTTCCACTTTGGCATCAACAGTGGATCATCTTCCAAAGGTCTCATACCAGACGCTCCACCAAGCAACAAATGGATTCTCTTCCAACAACTTGATAGGATCTGGTGGTTTTGGATTTGTATATAAAGGAATTCTTGAATCAGAAGGAAGAGTTGTTGCTATAAAGGTTCTTAACCTTCAAATCAAGGGAGCTCATGAAAGTTTCATTGCTGAATGTANTGCAATCAAAAGTATCCGCCATAGGAATCTTGTCAAGATTCTAACATGTTGCTCAAGCATGGATTACAATGGCAATGAGTTCAAAGCTTTAGTTTTTCAGTACATGGAAAATGGAAGCTTAGATAAATGGTTGCATCCTCCCGAGCTAGAAATTGGAGATCGACCAAGTTTGAACCTTCTCCAGAGACTAAATATTATCATAGATGTTGCTTCTGCATT 1187 0.3707 NLSSQLNQFDISHNKITGSIPAGLGNLINLIGVDMKFNLLKGSIPASFGKLQKIQSLKLNVNKFSGEIPLSLGNLSXXXXXXXXXXXXXXXXXXXXXXCHMLHYLDLSNNHLIGTIPLQLIGLPSLSLLLNLSHNSFNGSLPSEVGKLKSIDKLDASENVLSGEIPEEIGECISLEYLNLQGNSFQGAMPSSLASLKGLQLDGEVPIEGVFRNVSAISLKNNSELCGGITDLHLPPCSVKVFRMKKPNLRTSTLASTVDHLPKVSYQTLHQATNGFSSNNLIGSGGFGFVYKGILESEGRVVAIKVLNLQIKGAHESFIAECXAIKSIRHRNLVKILTCCSSMDYNGNEFKALVFQYMENGSLDKWLHPPELEIGDRPSLNLLQRLNIIIDVASA 395
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme14438g00001 395 Gene3D Transferase(Phosphotransferase) domain 1 259 395 - -
Trme14438g00001 395 ProSiteProfiles Protein kinase domain profile. 276 395 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme14438g00001 395 Gene3D Ribonuclease Inhibitor 1 243 IPR032675 -
Trme14438g00001 395 PANTHER OS04G0122200 PROTEIN 1 395 - -
Trme14438g00001 395 Pfam Protein tyrosine and serine/threonine kinase 279 394 IPR001245 GO:0004672|GO:0006468
Trme14438g00001 395 SUPERFAMILY RNI-like 4 200 - -
Trme14438g00001 395 FunFam Leucine-rich repeat receptor protein kinase EMS1 125 203 - -
Trme14438g00001 395 SUPERFAMILY Protein kinase-like (PK-like) 250 395 IPR011009 -
Trme14438g00001 395 FunFam LRR receptor-like serine/threonine-protein kinase EFR 247 357 - -
Trme14438g00001 395 Coils Coil 75 76 - -
Trme14438g00001 395 ProSitePatterns Protein kinases ATP-binding region signature. 282 305 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme14438g00001 Trme-Chr14438 149 1524 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme14438g00001 1 395 Receptor kinase-like Gene Family AT3G47110 41.880 8.36e-100 317
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XII-1 Trme14438g00001 PK_Tyr_Ser-Thr 1.1e-14 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme14438g00001 - - qsa:O6P43_025028 426.402