Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme144374g00001 ATGTTCGCTGCTGGTACAGAACCGTCGTCACAAGTTGTGCTATGGGGGATGTCTGAGATGGTAAAGAATCCAAAGGTAATGGAAGAAGCACAAGCTGAGGTAAGACGAGCGTTTGATAAAAAGGGTTATGTGGACGAGACAGAGATACACCAATTGATATACTTAAAGAATGTCGTCAAAGAAACACTAAGGTTGCATCCTACTGTGCCGTTGTTAGTTCCAAGAGAAAGTAGGGAGAAATGTCAAATCAATGGGTATGAGATCCCAGCTAAGACGAGAGTCATGGTTAATGCTTGGGCTATTGGAAGAGATCCAAGGTATTGGGATGATGCTGAGAGTTTTAAACCTGAGAGGTTTGTTAATAGTCCGATTGATTTTAAAGGCACGGATTTTGAATACATACCATTTGGTGTGGGAAGGAGGATGTGTCCCGGCATTGCATTTGGCTTGCCCAACGTTGAGCTGCCTCTTGCTCAGTTACTTTACCACTTTGATTGGAAGCTTCCCAATGGAATGAAGAATGAAGAA 528 0.4299 MFAAGTEPSSQVVLWGMSEMVKNPKVMEEAQAEVRRAFDKKGYVDETEIHQLIYLKNVVKETLRLHPTVPLLVPRESREKCQINGYEIPAKTRVMVNAWAIGRDPRYWDDAESFKPERFVNSPIDFKGTDFEYIPFGVGRRMCPGIAFGLPNVELPLAQLLYHFDWKLPNGMKNEE 176
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme144374g00001 176 PRINTS E-class P450 group I signature 97 121 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trme144374g00001 176 PRINTS E-class P450 group I signature 56 74 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trme144374g00001 176 PRINTS E-class P450 group I signature 133 143 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trme144374g00001 176 PRINTS E-class P450 group I signature 13 39 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trme144374g00001 176 PRINTS E-class P450 group I signature 143 166 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trme144374g00001 176 PRINTS P450 superfamily signature 57 68 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trme144374g00001 176 PRINTS P450 superfamily signature 134 143 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trme144374g00001 176 PRINTS P450 superfamily signature 4 21 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trme144374g00001 176 Coils Coil 172 176 - -
Trme144374g00001 176 Pfam Cytochrome P450 1 172 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trme144374g00001 176 Gene3D Cytochrome P450 1 176 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trme144374g00001 176 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 136 145 IPR017972 GO:0005506|GO:0016705
Trme144374g00001 176 PANTHER OS08G0105600 PROTEIN 1 175 - -
Trme144374g00001 176 SUPERFAMILY Cytochrome P450 1 173 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trme144374g00001 176 FunFam Predicted protein 2 176 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme144374g00001 Trme-Chr144374 33 560 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme144374g00001 1 169 Cytochrome P450 AT3G26230 53.216 1.83e-66 209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme144374g00001 - - mtr:11442302 321.242