Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Trme144273g00001 | GATCCACTCTACAACAAGAGTACAAAGCAATTTGAACTTGACTATAGAGATAAAGGAAGGGCAGAACTTGGAATCCAGAGATCAGTCAAAAACTTTCAGCTCACTTTAGAGGAAAATGGGAAGCAGACAATCCTGCAGCTAGGGAGGGTGGGAAAATCTACATTTGTTATGGACTACAGATATCCTTTGACTGGTTACCAGGCGTTTTGCATATGTTTGGCTTCCATTGATGCAAAGCTTTGTTGCATAGTGTAG | 255 | 0.4118 | DPLYNKSTKQFELDYRDKGRAELGIQRSVKNFQLTLEENGKQTILQLGRVGKSTFVMDYRYPLTGYQAFCICLASIDAKLCCIV | 84 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Trme144273g00001 | 84 | Gene3D | Tubby Protein; Chain A | 1 | 83 | IPR025659 | - | |
Trme144273g00001 | 84 | SUPERFAMILY | Tubby C-terminal domain-like | 2 | 82 | IPR025659 | - | |
Trme144273g00001 | 84 | Pfam | Tub family | 2 | 77 | IPR000007 | - | |
Trme144273g00001 | 84 | PRINTS | Tubby superfamily signature | 61 | 83 | IPR000007 | - | |
Trme144273g00001 | 84 | PRINTS | Tubby superfamily signature | 40 | 59 | IPR000007 | - | |
Trme144273g00001 | 84 | PRINTS | Tubby superfamily signature | 20 | 36 | IPR000007 | - | |
Trme144273g00001 | 84 | PANTHER | TUBBY-RELATED | 1 | 81 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Trme144273g00001 | Trme-Chr144273 | 2 | 560 | Dispersed |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Trme144273g00001 | 18 | 82 | TUB Transcription Factor Family | AT2G18280 | 47.297 | 8.70e-17 | 71.2 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TF | TUB | Trme144273g00001 | Tub | 5.1e-24 | CL0395 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Trme144273g00001 | K19600 | - | fve:101307614 | 147.517 |