Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme144273g00001 GATCCACTCTACAACAAGAGTACAAAGCAATTTGAACTTGACTATAGAGATAAAGGAAGGGCAGAACTTGGAATCCAGAGATCAGTCAAAAACTTTCAGCTCACTTTAGAGGAAAATGGGAAGCAGACAATCCTGCAGCTAGGGAGGGTGGGAAAATCTACATTTGTTATGGACTACAGATATCCTTTGACTGGTTACCAGGCGTTTTGCATATGTTTGGCTTCCATTGATGCAAAGCTTTGTTGCATAGTGTAG 255 0.4118 DPLYNKSTKQFELDYRDKGRAELGIQRSVKNFQLTLEENGKQTILQLGRVGKSTFVMDYRYPLTGYQAFCICLASIDAKLCCIV 84
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme144273g00001 84 Gene3D Tubby Protein; Chain A 1 83 IPR025659 -
Trme144273g00001 84 SUPERFAMILY Tubby C-terminal domain-like 2 82 IPR025659 -
Trme144273g00001 84 Pfam Tub family 2 77 IPR000007 -
Trme144273g00001 84 PRINTS Tubby superfamily signature 61 83 IPR000007 -
Trme144273g00001 84 PRINTS Tubby superfamily signature 40 59 IPR000007 -
Trme144273g00001 84 PRINTS Tubby superfamily signature 20 36 IPR000007 -
Trme144273g00001 84 PANTHER TUBBY-RELATED 1 81 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme144273g00001 Trme-Chr144273 2 560 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme144273g00001 18 82 TUB Transcription Factor Family AT2G18280 47.297 8.70e-17 71.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TUB Trme144273g00001 Tub 5.1e-24 CL0395
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme144273g00001 K19600 - fve:101307614 147.517