Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme144193g00001 ATGAGAGAGAGAGTAGAGAGAGAAACTGAGAGAGGAACGAGGGGGAGGTCTAGGGGTTTTTCTAAGCAAAAACATCATGGCTACATACACAGAGTTGACCAAGATTGTATCTCATTTTTCATCTCAAATTTTCCAGAGGATTGTTCTTCGGAGGATCTATGGGAGGAGTTTGCAAGGTTCGGTCGTGTAGCTGATGTCTTCATCCCAAAAAAGGTGGATAAATGGGGGAGGAGGTTTGGTTTTGTGAAGTATAAGGAGGTTAAGGAGATGGAGGTGTTGCTCTCAAGTCTGCAAGATGTTTGGATCGGATCTTTCAAACTTCGTGTTAACAAATCTCGTTTTGTCCGTAACGAGGAGAGAAGAAGGAGCGATACTTCTAGCAAACCAGTGCAGATG 396 0.4369 MRERVERETERGTRGRSRGFSKQKHHGYIHRVDQDCISFFISNFPEDCSSEDLWEEFARFGRVADVFIPKKVDKWGRRFGFVKYKEVKEMEVLLSSLQDVWIGSFKLRVNKSRFVRNEERRRSDTSSKPVQM 132
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme144193g00001 132 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 37 114 IPR000504 GO:0003723
Trme144193g00001 132 MobiDBLite consensus disorder prediction 1 21 - -
Trme144193g00001 132 PANTHER SERINE/ARGININE RICH SPLICING FACTOR 38 121 - -
Trme144193g00001 132 MobiDBLite consensus disorder prediction 1 17 - -
Trme144193g00001 132 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 40 107 IPR000504 GO:0003723
Trme144193g00001 132 SMART rrm1_1 38 110 IPR000504 GO:0003723
Trme144193g00001 132 SUPERFAMILY RNA-binding domain, RBD 33 113 IPR035979 GO:0003676
Trme144193g00001 132 CDD RRM_SF 40 110 - -
Trme144193g00001 132 Gene3D - 38 123 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme144193g00001 Trme-Chr144193 165 560 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme144193g00001 33 121 Eukaryotic Initiation Factors Gene Family AT3G16380 28.090 9.94e-06 42.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme144193g00001 - - smil:130994131 88.9669