Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme14415g00001 ATGGCATGTACAAGTTGTTCTGAGTCTGTTGAGAAAGCACTTCAAATGATTGATGGAGTGAAAAGGGCAATTGTTGGTTTGGCATTAGAGGAGGCCAAAGTGCATTATGATCCTAGCCTTGTTGATCCTGAAAAGATAATTGAAGCAGTAGAAGATGCGGGCTTTGGAGCAGAGCTTATTAGTTCTGGGAATGACGCGAACAGAGTTCATCTAAAACTCGAAGGGATTGATTCTGAAGAAGATGCTAACGTGTTAGTGTCTTATCTTGAGTTAGCTGCGGGTGTGAATCGTGTTGAAATGGATTTGTTAGAACATATAGTTACNNNNNNNNNTNNNNNNNNNNTNNNNNNNNNNAGAACTCTCATTCACTGTGTTGAGGAAGCTAGCCGTGGCTCCAAGGTGTATCGAGCAACTTTGTATTCTCCTTCGGGACGAAGAGAAAAGGATAAGGTGAATGAAATTCGTATGTATAGGGATCAGTTTCTGTTCAGCTGCTTGTTTTCTGTACCTGTGTTTGTGTTTGCCATGGTGCTTCCCATGCTTCCTCCATATGGCAACTGGTTGAACTATAAGGTCCATAATATGCTTACTCTTGGGTTGTTTTTAAGATGGATCCTTTGCACACCTGTGCAGTTCATAGTTGGAAAAAGGTTCTATGTGGGATCATATCATGCACTGAGGAGAAGATCTGCTAACATGGATGTGCTGGTTGCGTTAGGCACTAATGCTGCTTATTTTTACTCATTATATATTGTAATAAAAGCACTGACTTCAGATACATTTCAAGGACAAGACTTCTTTGAAACCAGTTCCATGTTGATATCCTTTATTCTATTAGGAAAATATTTGGAGATTGTGGCTAAAGGGAAAACATCAGATGC 881 0.3893 MACTSCSESVEKALQMIDGVKRAIVGLALEEAKVHYDPSLVDPEKIIEAVEDAGFGAELISSGNDANRVHLKLEGIDSEEDANVLVSYLELAAGVNRVEMDLLEHIVTXXXXXXXXXXRTLIHCVEEASRGSKVYRATLYSPSGRREKDKVNEIRMYRDQFLFSCLFSVPVFVFAMVLPMLPPYGNWLNYKVHNMLTLGLFLRWILCTPVQFIVGKRFYVGSYHALRRRSANMDVLVALGTNAAYFYSLYIVIKALTSDTFQGQDFFETSSMLISFILLGKYLEIVAKGKTSDA 294
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme14415g00001 294 Gene3D - 1 64 - -
Trme14415g00001 294 CDD HMA 1 58 IPR006121 GO:0046872
Trme14415g00001 294 PANTHER P-TYPE CATION-TRANSPORTING ATPASE 1 294 - -
Trme14415g00001 294 FunFam Copper-transporting ATPase HMA5 1 62 - -
Trme14415g00001 294 Pfam Heavy-metal-associated domain 1 55 IPR006121 GO:0046872
Trme14415g00001 294 PRINTS Copper-transporting ATPase 1 signature 48 68 - -
Trme14415g00001 294 PRINTS Copper-transporting ATPase 1 signature 216 241 - -
Trme14415g00001 294 PRINTS Copper-transporting ATPase 1 signature 19 42 - -
Trme14415g00001 294 PRINTS Copper-transporting ATPase 1 signature 196 216 - -
Trme14415g00001 294 PRINTS Copper-transporting ATPase 1 signature 161 182 - -
Trme14415g00001 294 ProSiteProfiles Heavy-metal-associated domain profile. 1 58 IPR006121 GO:0046872
Trme14415g00001 294 SUPERFAMILY HMA, heavy metal-associated domain 1 63 IPR036163 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme14415g00001 Trme-Chr14415 1 1006 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme14415g00001 1 294 Primary Pumps ATPases AT1G63440 50.676 1.80e-91 290
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme14415g00001 K17686 - gmx:100793894 481.87