Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme14408g00001 ATGAGAGTTTGGCTTGGAACTTATGAAACTGCTGAAGCTGCAGCTTATGCTTATGATCGTGCAGCTTATAAGCTTAGAGGAGAATATGCACGTTTGAATTTTCCAAATTTGAAAGATCCAACTAAGTTGGGTTTTGGTGATTCTACTAAATTGAATGCTTTGAAGAATTCTGTTGATGCTAAAATTCAAGCTATTTGTCAAAAGGTGAAAAGAGAAAAAGCTAAAAAGATTGCTGCTAAGAAGATGAAGAAGAAGAATTTAGAGAGTGATAATAAGAAAGAGGAGGTANNNNTNNNNNNNNNNTNNNNNNNNNNTTCTTCTTCTTCGTCTTCATTACCTTTGTCACCGTCGATTTTTTATGAAGATTGGGTGAATGAATTGTTTTCACCAACTGTTTCTGAGGATGGAATTTGGAAAGGGGAGAATTCGAATTCGCCGAATTCTGTTTCGACAATGGTGACAGAGGAAACAGAGTTTGAAGATTGTTCCTTAGCCTTAGCAAGGATGCCATCTTTTGATCCTGAATTGATTTGGGAAGTTCTTGCTGTTTAG 552 0.3496 MRVWLGTYETAEAAAYAYDRAAYKLRGEYARLNFPNLKDPTKLGFGDSTKLNALKNSVDAKIQAICQKVKREKAKKIAAKKMKKKNLESDNKKEEVXXXXXXXXXSSSSSSLPLSPSIFYEDWVNELFSPTVSEDGIWKGENSNSPNSVSTMVTEETEFEDCSLALARMPSFDPELIWEVLAV 183
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme14408g00001 183 Pfam AP2 domain 2 28 IPR001471 GO:0003700|GO:0006355
Trme14408g00001 183 Gene3D AP2/ERF domain 1 36 IPR036955 GO:0003700|GO:0006355
Trme14408g00001 183 SMART rav1_2 2 41 IPR001471 GO:0003700|GO:0006355
Trme14408g00001 183 Coils Coil 70 96 - -
Trme14408g00001 183 ProSiteProfiles AP2/ERF domain profile. 1 35 IPR001471 GO:0003700|GO:0006355
Trme14408g00001 183 SUPERFAMILY DNA-binding domain 2 35 IPR016177 GO:0003677
Trme14408g00001 183 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF061 1 181 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme14408g00001 Trme-Chr14408 672 1223 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme14408g00001 1 182 AP2-EREBP Transcription Factor Family AT1G64380 48.731 7.28e-32 115
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Trme14408g00001 AP2 1.8e-05 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme14408g00001 - - vvo:131647084 265.003