Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme144001g00001 ATGGGTCGTGGAGGTGGCACAACCGCCGCAGCGGCGGCGGCGGCTGAACCGGGTTTTTTCAAAGAGCCAAGATACAGAGGCGTGAGAAAAAGACCGTGGGGCCGGTTCGCCGCCGAGATCAGAGATCCTTTGAAGAAAGCAAGAGTTTGGCTCGGAACATT 161 0.5776 MGRGGGTTAAAAAAAEPGFFKEPRYRGVRKRPWGRFAAEIRDPLKKARVWLGT 53
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme144001g00001 53 PRINTS Ethylene responsive element binding protein signature 47 53 IPR001471 GO:0003700|GO:0006355
Trme144001g00001 53 PRINTS Ethylene responsive element binding protein signature 25 36 IPR001471 GO:0003700|GO:0006355
Trme144001g00001 53 ProSiteProfiles AP2/ERF domain profile. 24 53 IPR001471 GO:0003700|GO:0006355
Trme144001g00001 53 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 16 53 - -
Trme144001g00001 53 Gene3D AP2/ERF domain 24 53 IPR036955 GO:0003700|GO:0006355
Trme144001g00001 53 SUPERFAMILY DNA-binding domain 24 53 IPR016177 GO:0003677
Trme144001g00001 53 SMART rav1_2 24 53 IPR001471 GO:0003700|GO:0006355
Trme144001g00001 53 Pfam AP2 domain 23 53 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme144001g00001 Trme-Chr144001 1 161 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme144001g00001 2 53 AP2-EREBP Transcription Factor Family AT3G20310 71.154 1.02e-19 76.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Trme144001g00001 AP2 1.6e-06 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme144001g00001 K09286 - gmx:100782025 82.0333